RNA id: XM_036980343.1


Basic Information

Item Value
RNA id XM_036980343.1
length 1633
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118964897
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49188175 ~ 49189807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTTTccaatatattttatttcagctcatgaaacatgtgaccaacacttcaaatgtgtttatatttttgttcagtatagttttctTGTCTGTCTCAATCTCTAGCAACATCAATACATTTAACTGGTTTTCATATAGAGTAGGGATTTCAATTCACTTGCTTGCCCTGCACGATGGCATGCTAAATTACACAAGTCCTTCAGCCGGTGTCTTCTTGTCTCTAACTACAATAGTCATAATTTTGGCCTCTATGGTGACTCTTCCCCATAGGGAACTTTTATGAACTTCTGTTTGTACCACCGCACGGTAATACAACGTACGAGTTTAAATATTGAACTCGTGGTACGCACGGCAGCCTAGTGCTGGATCCCAAATTTAGCGTTGCGGACTGCTCCATTGACAATGAATGACTTCCGCCGGAACGCAGAGTTTGACACTTCTGGTGAAACTTAAGCGTTGACTTAACTCTGGCAGCAGCGACAAATACATCTCGGCTCAGTCATGTCTGATGAATTTGTGCTGTAAAACCTGCGCCAATATTGCAAATCACTACGGAATCGCACTGAACAAACCCAGTTGATAGacgtatatgtattttttttttaaggaagCTGGATCGCTAACAATGACTGTTACGTTAGcaacaagctagctaacgttatctataTCCACAAGTACGTGTAGTCGTCAACGTTTTACACGATTGGGTGTCACAACAGTATGGTTGGTGACGGTGTCATTTACTAGCTACTGCCAACAAaaaaatctagctagctagctaacgttagctagctgcttAATCTGTCGCGCAACCCGAACCGTTTTCTTCGAGAACTACGACAACGCTACCCCAGCTCTGCCCATCCAGGCAGTCAGTGTTAACAAAACAAGAGATTGGAGCGATGACGGCAACATCATGTCTGAGAGATATCCTTTAGTCGAGAAAGCCCTATCGGAGGGCTATGCTCGGTTTAGGTTCAAGGACACGTCGCTGCTAATTTGGCAACAGCAGCAAATGGAGCTGGAACAGGGACCACCGAGTAACTACCTCAGTCGGAGTCAAAGTACGTGGTACAGTCAGTATGGAAACCAGGCAGTCGTGGTACGGGACAAACGAACTGTCACAGTGGATCCAATTGCTGACGCTGGAAGTTCCAGAATATGTTTGATTATGTGACAGTTATAGTGACACATACATTTATCCATATGCCCTACGCTTCCATATTTGTAAACTGTTTGTGCAAAAATATATGGTGCAGACTGAAGTTGATTATTTGTGTCCTGAAAGACGTCTGCCAGAAACATGTCATGACCATTCACTGGCCGACTATGTGGTGGTCAAAGTAAGCCTGTGCATGTACATTGGGGTATGGCAGTGTTAGCTAAACATGtctttctacccctgaacaaggcagttaactcactgttcctaggccgtcattgaaaataagaatttgacttgcctagttaaatgtaaaaaaataaatgatcaTTTATAGCATTTTTGCATTTCAATGCAGTATTGTCAATATATGCGCTTGTCTCTCACAAACACTTGTAACAAGACAATTGTTGCAACAGCAAGTGGAGGTTGATTATGTGCATTGTCCTGTGAAATAGAAGTCTGCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585177 lncRNA upstream 25715 49161794 ~ 49162460 (+) True G515897
TU585221 lncRNA upstream 79560 49108346 ~ 49108615 (+) True G515932
TU585102 lncRNA upstream 150633 49033823 ~ 49037542 (+) True LOC110526072
TU585116 lncRNA upstream 229783 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 232754 48955109 ~ 48955421 (+) True G515836
TU585285 lncRNA downstream 39362 49229169 ~ 49230070 (+) True G515985
TU585286 lncRNA downstream 42704 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 43772 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA downstream 52403 49242210 ~ 49246453 (+) True LOC110526066
TU585306 lncRNA downstream 80807 49270614 ~ 49290474 (+) True G516006
XM_021604927.2 mRNA upstream 841 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA upstream 841 49183861 ~ 49187334 (+) False edf1
NM_001124502.1 mRNA upstream 1465 49184189 ~ 49186710 (+) False edf1
XM_021606668.2 mRNA upstream 32173 49146127 ~ 49156002 (+) True LOC110526069
XM_021606671.2 mRNA upstream 53870 49076657 ~ 49134305 (+) True qsox2
XR_005052142.1 mRNA downstream 52232 49242039 ~ 49246500 (+) False LOC110526066
XR_005052148.1 mRNA downstream 112858 49302665 ~ 49303356 (+) True LOC118964903
XM_036980345.1 mRNA downstream 172223 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA downstream 172224 49362031 ~ 49365894 (+) False LOC118964898
XM_036980364.1 mRNA downstream 328785 49518592 ~ 49522715 (+) True LOC118936463
TU585255 other upstream 852 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 233884 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 600287 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1235921 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1671465 47513786 ~ 47516710 (+) True LOC118964881
TU585185 other downstream 43772 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 115318 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 196707 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 559381 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1530594 50720401 ~ 50735236 (+) True LOC118964907

Expression Profile