RNA id: XR_005052148.1



Basic Information


Item Value
RNA id XR_005052148.1
length 276
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC118964903
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49302665 ~ 49303356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccatcctgttagaaggtaacagattattttattacaatggtTCAATTGGATTTTCATTGTGTTCAATGGTGTTATTTGCCCCCTAGTGGATGTTTCTGGTACTTAGAAAGACTACGCAAACAGGAAGGAGAGAATTTGTTCTGCACGCATAGAAGCAGCTACAAACAACGCTACGGTGCAGGTCTTTCAATGTAGTTATTTCTTGTCACGCTTCAGccttggaaaatatttgttttttcacaacataaacgttttcaatatattcattcaagaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU585306 lncRNA upstream 12191 49270614 ~ 49290474 (+) True G516006
TU585186 lncRNA upstream 42033 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA upstream 56212 49242210 ~ 49246453 (+) True LOC110526066
TU585286 lncRNA upstream 69670 49232511 ~ 49232995 (+) True G515986
TU585285 lncRNA upstream 72595 49229169 ~ 49230070 (+) True G515985
TU585360 lncRNA downstream 29684 49333040 ~ 49333982 (+) True G516038
TU585367 lncRNA downstream 43963 49347319 ~ 49385000 (+) False LOC118964898
TU585372 lncRNA downstream 54405 49357761 ~ 49359016 (+) True G516047
TU585375 lncRNA downstream 63463 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA downstream 83341 49386697 ~ 49387212 (+) True LOC118964898
XR_005052142.1 mRNA upstream 56165 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 112858 49188175 ~ 49189807 (+) True LOC118964897
XM_021604927.2 mRNA upstream 115331 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA upstream 115331 49183861 ~ 49187334 (+) False edf1
NM_001124502.1 mRNA upstream 115955 49184189 ~ 49186710 (+) False edf1
XM_036980345.1 mRNA downstream 58674 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA downstream 58675 49362031 ~ 49365894 (+) False LOC118964898
XM_036980364.1 mRNA downstream 215236 49518592 ~ 49522715 (+) True LOC118936463
XM_036981758.1 mRNA downstream 249673 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 370785 49674141 ~ 49747277 (+) True cfap77
TU585185 other upstream 56212 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 115342 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 348374 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 714777 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1350411 47950006 ~ 47952254 (+) True G515069
TU585313 other downstream 1769 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 83158 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 445832 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1417045 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1608472 50911828 ~ 50922097 (+) True LOC110526128

Expression Profile


XR_005052148.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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XR_005052148.1 Expression in each Bioproject

Bar chart with 4 bars.
XR_005052148.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.