RNA id: XM_036980361.1


Basic Information

Item Value
RNA id XM_036980361.1
length 1179
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110512258
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49316279 ~ 49320412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtgataaCAGTGTCCAGAAGGCAGCAGTAGATGGTACAGGGAAGGCGCCATTACGCTAGCACGCGGGCTACActgcgtttaaagttagtagccctccgacggaggccggttgaaggcacagcggatggagtattcgtcggcagaccagttgtggtggtgcggcggggggccgtgtcgacagagaatccaagccagatggcgaaagagGTAGtacagagagatgatgatgatcccccgagggaggggagggaggttgtTGAGGAAGAACCAGTGGCCCAGCTCAAGAAGGAGCCCAAGAAGACAGGAAAGGCGAAGAGGAAAAGTAGTGCCAAGAAGTCAGGGGAGCAGGGCACTGATACGGATGCAGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAATGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcatgcgcaatcttactgatgaGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAGACCATTGTCAACTTCATTGCACAGACCACCCTGCAGATCCTGCTGCCGGCCCTGGCCCGCATTCTAGGGGTGACGGGCTTTTATGACAACTCTGACTCACTCAAGAGGGGTGGCAGTGCAAGATCCTTCACTGCCTTTGAGCAAAAAATActggagctcatccaggaagttaAATATTTGGCGAAGTAACTGTGGCGGCAGGGCTCTCCGACCAAGGTCTAGCACACCCTCTTCcaagagttcccagacctcaCTGAAAGTCCACCTGGGAATGCCAGaggacagtatcatcagcagtgtccaggagcaactgtcaaaatctgaccaaaTGGTGGCTGCAGGACAGCTTTCACAAATAGATAAAGTGGTTGGAACTATGCTGGAGAACATTGAGAAGATAAGCAGCGAATGTGGCGAGGAATTGGTCTATCAAGAGTCACTGCGGTCTTCCTCCTCATTGTCATTCTCAACTGCCAAATCACAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585660 lncRNA downstream 82758 49233143 ~ 49233521 (-) True G516300
TU585659 lncRNA downstream 83229 49232522 ~ 49233050 (-) True G516299
TU585655 lncRNA downstream 87199 49228064 ~ 49229080 (-) False G516298
TU585751 lncRNA upstream 47641 49367999 ~ 49371049 (-) True G516364
TU585757 lncRNA upstream 81483 49401841 ~ 49419385 (-) True G516369
TU585697 lncRNA upstream 108400 49428758 ~ 49431950 (-) True LOC118964901
TU585773 lncRNA upstream 143585 49463943 ~ 49494964 (-) True G516384
TU585776 lncRNA upstream 151073 49471431 ~ 49504382 (-) True G516386
XM_021606665.2 mRNA downstream 75585 49233584 ~ 49240694 (-) True serpind1
XM_036980334.1 mRNA downstream 96098 49195188 ~ 49220181 (-) False LOC110526068
XM_021592749.2 mRNA upstream 26500 49346858 ~ 49349193 (-) False LOC110512256
XR_005052146.1 mRNA upstream 59358 49379716 ~ 49383600 (-) False LOC118936342
XR_005052144.1 mRNA upstream 59358 49379716 ~ 49384833 (-) False LOC118936342
XR_005052145.1 mRNA upstream 59358 49379716 ~ 49384833 (-) False LOC118936342
XR_005052147.1 mRNA upstream 59358 49379716 ~ 49384833 (-) False LOC118936342
TU584888 other downstream 685974 48627038 ~ 48630305 (-) True prdm12b
TU584725 other downstream 935973 48375946 ~ 48380306 (-) True LOC118964892
TU584351 other downstream 995691 48319747 ~ 48320588 (-) True G515139
TU584348 other downstream 997872 48317648 ~ 48318407 (-) True LOC110512142
TU584341 other downstream 1022825 48292846 ~ 48293454 (-) False LOC110512142
TU585712 other upstream 27112 49347470 ~ 49349136 (-) True LOC110512256
TU585706 other upstream 59464 49379822 ~ 49380822 (-) True LOC118936342
TU585690 other upstream 214857 49535215 ~ 49536285 (-) True G516320
TU585710 other upstream 302691 49623049 ~ 49623743 (-) True LOC110515945
TU587323 other upstream 1325005 50645363 ~ 50651419 (-) False G517777

Expression Profile