RNA id: TU585712


Basic Information

Item Value
RNA id TU585712
length 1475
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC110512256
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49346858 ~ 49349193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAGACAGAGTGGGAATTTGCACTCCCATTCCTTCTGAGTTACCCGAGAGTACTGCTCAGCCCATTGTAAGATGCTCAGTCATTGACATGAGCGAATCTACTAAGCCAAAAACAATGGTGTGTGATGCCAGAACAAGCATGTTTGCCATAGCCGATACCATCATGAAGAAGGTATATCCAGAGGCAGAAGGGCAGGTTACATCTCACCCTGATCTAACAGATCCAATAGCTAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcCCGTGATCTCAGTCACCAAGTCAACCGCATAATTTCTGATagcaacttgacccctctgggactgacagtggcggctggaaagagtgcatctgataccatcctttcgaagctgaagaggaatgacaaggTGGGGAAGCCCACAACTTACGAGCTGGTTCAGCTGTTTGTAGAGGAGTCTGTTAAGTGCCTCCTGCTTCCTAGTTTTGTGCCCTATTCAActtcaatgagtttggctcagggGGCCAAGGTGTTGGCTAGAGTGTCTGAAGATAGAATTTcatgctcttcttcttcttcatcagtaTTTAGTGACAGTCAGTCTCTTTACCAAAGTTATGGTAAGCCAGGTCATGTACTCTGTGGATTCTGATGCAGAAAGTAGAGGATCCTCTCCAACTGAATCTCTCCAAACATCTGAACCCACTATATCTGATGTAGGCAATCTATTGAGTGGCAAGTCCTCCCCTCGGCTGTCTCCTTCTGGCACCATTATGGCAACAAGCGAGACCTCCAATGCAGCACAAATCTTGAAGGCCAACATTGATGGAGAGGAAGTGGATACCACCAGTCATTCTGGTGTAGCTCAAAACATTGTCAGGGACGATATGTCAACCAGCCCAGACATGGTCAAAGATGTCACACTTCCAACCCCATCCTCTGATAACTTGGGCAGTGATGATGACGTCACCGGCCTCATCAGCGTGTTAGTAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCTGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585670 lncRNA downstream 4971 49299725 ~ 49342499 (-) True G516304
TU585733 lncRNA downstream 23466 49299510 ~ 49324004 (-) True G516347
TU585660 lncRNA downstream 113949 49233143 ~ 49233521 (-) True G516300
TU585659 lncRNA downstream 114420 49232522 ~ 49233050 (-) True G516299
TU585655 lncRNA downstream 118390 49228064 ~ 49229080 (-) False G516298
TU585751 lncRNA upstream 18863 49367999 ~ 49371049 (-) True G516364
TU585757 lncRNA upstream 52705 49401841 ~ 49419385 (-) True G516369
TU585697 lncRNA upstream 79622 49428758 ~ 49431950 (-) True LOC118964901
TU585773 lncRNA upstream 114807 49463943 ~ 49494964 (-) True G516384
TU585776 lncRNA upstream 122295 49471431 ~ 49504382 (-) True G516386
XM_036980361.1 mRNA downstream 27112 49316279 ~ 49320358 (-) False LOC110512258
XM_036980362.1 mRNA downstream 27112 49316279 ~ 49320358 (-) False LOC110512258
XM_036980346.1 mRNA downstream 31077 49314225 ~ 49316393 (-) True LOC118964899
XM_021606665.2 mRNA downstream 106776 49233584 ~ 49240694 (-) True serpind1
XM_036980337.1 mRNA downstream 127289 49195188 ~ 49220181 (-) False LOC110526068
XR_005052146.1 mRNA upstream 30580 49379716 ~ 49383600 (-) False LOC118936342
XR_005052144.1 mRNA upstream 30580 49379716 ~ 49384833 (-) False LOC118936342
XR_005052145.1 mRNA upstream 30580 49379716 ~ 49384833 (-) False LOC118936342
XR_005052147.1 mRNA upstream 30580 49379716 ~ 49384833 (-) False LOC118936342
XR_005052143.1 mRNA upstream 30580 49379716 ~ 49385907 (-) False LOC118936342
TU585703 other downstream 27058 49317044 ~ 49320412 (-) True LOC110512258
TU584888 other downstream 717165 48627038 ~ 48630305 (-) True prdm12b
TU584725 other downstream 967164 48375946 ~ 48380306 (-) True LOC118964892
TU584351 other downstream 1026882 48319747 ~ 48320588 (-) True G515139
TU584348 other downstream 1029063 48317648 ~ 48318407 (-) True LOC110512142
TU585706 other upstream 30686 49379822 ~ 49380822 (-) True LOC118936342
TU585690 other upstream 186079 49535215 ~ 49536285 (-) True G516320
TU585710 other upstream 273913 49623049 ~ 49623743 (-) True LOC110515945
TU587323 other upstream 1296227 50645363 ~ 50651419 (-) False G517777
TU587446 other upstream 1562678 50911814 ~ 50922098 (-) True G517877

Expression Profile