RNA id: XM_036980344.1


Basic Information

Item Value
RNA id XM_036980344.1
length 3500
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118964898
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49347319 ~ 49387212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATCATGTCAGTTGGCTTTAGGCTTCTAGAACTACGGTGGTATGAGAAGTAATCCATCATTGCTCTAATTTGGTTTTCAGGCTCACTAATGACCCAGATTAGATACAGTTGGTTACATTTGCATGGCTTAAGTGGTGATTGTGTGTTTATCTTCAAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCCAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTAGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCGCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaagacacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGGTCTTCACAGAAGATAACCTTCTCTCTAGCCGGCACACTCTATGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTAGCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCGGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttagccgttgtcagttcatctgatgagtccctagaggcttgttggtttgttgatggtgtcctatcaaagcttgatgactaTACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGCTCAGAAGGGAGTGTCAGAATCACAGAGTCCTCAACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTTGCAATGACTTTCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATTATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATGGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTCGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGACTCTAAAATGCCAGAGATTTCTACAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCGAGTGCTAAAGTCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGGATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatggactccagcaaagatgatggcatctgttttgtcaccatactggtgataaggttgctatcggagatcagaccctcagccctagatggaccctcccaacaggcagcagatctgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgCATCCAGATTATCCAGGACACAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGGAAGCAGCTATGTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtGCAGGGACGCAAGGAGGCGTCAAGACCAGCTTCTGCTGCAACAAACCCATCAGACCAGgctgagatggagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGACCAGACTGAGATTCGCTCTACTGATGGACATTGGATAGctccagttgGAGAGGGTTCTCCCTCCAAATCTCAGCCTGTCAAAAAACGATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTGTTACGCTGCATGAAGAACTACGTTTGTAACAGCAAGACTTTTGACAAGAGGAATTTCTGCATGTCTAACCTTTCaaagtctatttgatcaaataaatgccaatgattttacaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585372 lncRNA upstream 3015 49357761 ~ 49359016 (+) True G516047
TU585316 lncRNA upstream 26926 49283715 ~ 49335105 (+) True G516012
TU585360 lncRNA upstream 28049 49333040 ~ 49333982 (+) True G516038
TU585306 lncRNA upstream 71557 49270614 ~ 49290474 (+) True G516006
TU585187 lncRNA upstream 115578 49242210 ~ 49246453 (+) True LOC110526066
TU585375 lncRNA downstream 925 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA downstream 20803 49386697 ~ 49387212 (+) True LOC118964898
TU585346 lncRNA downstream 137638 49503532 ~ 49506083 (+) True G516029
TU585416 lncRNA downstream 182087 49547981 ~ 49565332 (+) True G516089
TU585420 lncRNA downstream 192075 49557969 ~ 49567767 (+) True G516093
XR_005052148.1 mRNA upstream 58675 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 115531 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 172224 49188175 ~ 49189807 (+) True LOC118964897
XM_021604928.2 mRNA upstream 174697 49183861 ~ 49187334 (+) False edf1
XM_036980364.1 mRNA downstream 152698 49518592 ~ 49522715 (+) True LOC118936463
XM_036981758.1 mRNA downstream 187135 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 308247 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 382894 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 529954 49895848 ~ 49897364 (+) False spaca9
TU585313 other upstream 54891 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 115578 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 174708 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 407740 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 774143 48551619 ~ 48587888 (+) False G515189
TU585370 other downstream 20620 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 383294 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1354507 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1545934 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2912599 52278493 ~ 52278998 (+) True LOC110493840

Expression Profile