RNA id: TU585367


Basic Information

Item Value
RNA id TU585367
length 4864
lncRNA type read_through
GC content 0.42
exon number 3
gene id LOC118964898
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49347319 ~ 49387212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataacaagtaatctaactaacaagtaatctaactaacaatgtCCTGTTGTGTGAACTTACGCATGCCATCTTCAGCAGTGGTCTGTACTTGTTCTGATTCAGAGCGGTGGGAATCCTTCTTGTTCCCCTTCTTGAATAGCTAAGTATTTaaagagaaaaacatgttttaaaaaatgtcacagcTGACCAACCTCATGATGATAACAATCACACCTAccacaccagcacaacaacatTTATGATTGGTTTTGGAATGAACGGATGGTTTTATATTTTTACACTGAATAGCATTGTTTACTCACAACTGTTCATTTAAATATGTTTGCTGTACCTTTAAGTTGCTTGTCAGCCTGACCAGCCTTTGTAGAAAAGATAGTTTCCCGCTGCTAGCCCTCACATCCTCAGCCAGTGGAAGAGCCTTAGGCCCGGTGGTTTTGACTGATGTTCTTGAGGCTGCCCTCAATGCCTCATTACATCTGTGGAGAAGCGCTTCACTCAAAGACTTGACAAGAATCCTATCAAATGAAgagtcctgagtcgacacggccTGTTGGAGGATTTTCTCAGAGCCAAACTCCTCCAACAGATTTTTATAGACGACTCTGTAGACTTTATGAATCCTCAAGTTCTCTGGATAGGCTTGtgtctcagagcagcctgaccatgcacagaagACCTCCATAACTTTAGCCCAAGTTATCAGAGGATGGGGTTGGAAGTGTGACATCTTTGACCATGTCTGGGCTGGTTGACATATCGTCCCTGACAATGTTTTGAGCTACACCAGAATGACTGGTGGTATCCACTTCCTCTCCATCAATGTTGGCCTTCAAGATTTGTGCTGCATTGGAGGTCTCGCTTGTTGCCATAATGGTGCCAGAAGGAGACAGCCGAGGGGAGGACTTGCCACTCAATAGATTGCCTACATCAGATATAGTGGGTTCAGATGTTTGGAGAGATTCAGTTGGAGAGGATCCTCTACTTTCTGCATCAGAATCCACAGAGTACATGACCTGGCTTACCATAACTTTGGTAAAGAGACTGACTGTCACTAAAtactgatgaagaagaagaagaagagcatgAAATTCTATCTTCAGACACTCTAGCCAACACCTTGGCCccctgagccaaactcattgaagTTGAATAGGGCACAAAACTAGGAAGCAGGAGGCACTTAACAGACTCCTCTACAAACAGCTGAACCAGCTTGTAAGTTGTGGGCTTCCCCAccttgtcattcctcttcagcttcgaaaggatggtatcagatgcactctttccagccgccactgtcagtcccagaggggtcaagttgctATCGGAAATTATGCGGTTGACTTGGTGACTGAGATCACGGgagagagcaccaatcctacCCTGAGATATGAGCTCCTCCAGTCTAGCTATTGGATCTGTTAGATCAGGGTGAGATGTAACCTGCCCTTCTGCCTCTGGATATACCTTCTTCATGATGGTATCGGCTATGGCAAACATGCTTGTTCTGGCATCACACACCATTGTTTTTGGCTTAGAAGATTCGCTCATGTCAATGACTGAGCATCTTACAATGGGCTGAGCAGTACTCTCGGGTAACTCAGAAGGAATGGGAGTGCAAATTCCCACTCTGTCTTCTGTGATTTGGCAGTTGAGAatgacaacgaggaggaagaCCGCAGTGACTCTTGATAGACCAATTCCTCGCCACATTCGCTGCTTATCTTCTCAATGTTCTCCAGCATAGTTCCAACCACTTTATCTATTTGTGAAAGCTGTCCTGCAGCCACCAtttggtcagattttgacagttgctcctggacactgctgatgatactgtcctCTGGCATTCCCAGGTGGACTTTCAGtgaggtctgggaactttaaaatgaacaagcaaAGCATGTTAATTGCTGTCTGAAGTTGGAAAATCGATATCTTAGTGCTAACAAATCTAACAAGCATTATAATTGAgtattctaaatgtaatttatatGTGTTTATTAGATATTGCAAAACACACCTGTTAGAAAGCTGGAAAATATTGAAATGGGGAAATTATTGTTCATCAGTTTGAGGGTTCGGAttaaccgcacacacacacacacacacacacattatggggaacatacagtacctcttgGAAGAGGGTGTGCTAGACCTTGGTCGGAGATCCCTGCCGCCACAGTTACTTCGCCAAATATTtaacttcctggatgagctccagTCTTTTCTACTCAAAGGCAGTGAAGGATCTTGCACTGCCACCCCTCTTGAGTGAGTCAGCGTTGTCATAAAAGCCCGTCACCCCTAGAATGCGGGCCAGGGCCGGCAGCAGGATCTGCAGGGTGGTCTGTGCAATGAAGTTGACAATGGTCTTGCACAATTTTGCAAGCTGTTCCTTTGTCATCTGCATTGcacaaacaaaacagaacacagcaggtttGGCAATGAGACTCtgatgtaaagtattctagatTAAACAGAATGCATTTCACCAACATCGTTTTCCTTAtctgtgactgaattcaaagtTGGATGAAGTATGACAGATTAATGAACGTAATAGCAGAATAGAACTATGGTTAATTCCTCTCTTGATTCAACACAACATTCCCAAATCAAAGGTCAAAGGCTGATGGAGAAACTTACAGGTTTTTTAAATCCTTTATAGATCACTTGCCATTGCCTAGAaaagaaaaaataaatgtgttttacttactttttatttccttctgcacaaaatatgtgaggctagagcaaaacatggttctaacatactcatcagtaagATTGCGCATGAACGAGATGAGGATTGGGTAGCAGTCCTCCATCTCATCTTTGTTGCCTGGGCCGAGTGCAGCCTTAAGAGCATTCTTCTCCAAGAGCTCAATAACAGATCCTCTGTCCGGGTGTTTATTCCTCAATCCTAAATATGTTATTACCATATAGGACAATTCAGGATAAGTCAGACGCTTTTCTCTTAATACAATACTTCGATAAAATTGCTACAATAGGACTATTGAATAACACTATCCATGCAACATTTCTTACTGACTCCAGTTTCTAACATGACCTTTATCTATGATATTCAAGTTTAGAGAACCAACATACTACAGAGGGAAAATCTATGACCTGGATCCGTATCAGTGCCCTGCTCCCCTGACTTCTTGGCACTACTTTTCCTCTTCGCCttggatagaatataatagaatagattcCAGATCACAAATAATAGACATGTTACATCAGGTCAATGCAGCTATTGTGACAATTGAGTGTTACTAGTCTAGTAGTTGCCCTGTCACTCCTGCCATTTTACCTTTCCTGTCTTCTTGGGCTCCTTCTTGAGCTGGGCCACTGGTTCTTCCTCAACaacctccctccactccctcggGGGATCTTCATCATCTCTCTGTACTACCTGAAGGACATAGGAATTTCATGTCAATGTCAGATTAGATTCTTGCAAAGGACATCatagagctacagccatatcagAGCTAAACTGGTGATTGACTTAATAGAGAGAACTAGACATTTGTTTTGCAATAGACTATGTTATCTTAAATGACGTTTTCCTTAGTTACATTCCCAAATATTTAGTGTCATTTAACCTACCTTTTCTTCATCCATAATAGCATACAGTATTTTTTATATCTCGAAAAACGTGTCCTTATCTGTGTTGTTTTCACTCATGTTGAGTTTACTGAGGAcaatattgcagccactgacgaaTTAAGAACTTCATACCACGTCATGGAATGTTAGACCTTTATGCACATTCCCATTCTCTCATTAATCTTGGGGGGGAAATATATTGATCAGATTACACACTTTCCCCATCAACCGTTTTCGATACAGCTAGGCCCACATTGAAATCTGTTCACTAAGCACTGCGACTCAGCAGGTCAAAACAGAAATAAACCTAGTCTAATTTCGTGTCGACCTCTTTTGGATGTATTTCGGTACCCCATTTAGTGAGCCAGTTGATtgatctattccttatagtgcattccttaaaagtaggcctacattagggaataaggtgctatttggtagcatattcctctctagcccatgcctccaccaatccaatgattTTAGATTTGTAGGAAGAAGCGAACgagagtgtacacttcaggagaaggAGATATTATTGGACTGTATCCCTAGGCTATAGCCAGGCCTAAACCAAGTAGCCTTGAGTACGATCCCAAAAGCTTGGATTGCCAAAGGCCTATCAGAGCTAAATTGGTGATAACAACTTtaaacttactgtaaaacatgttcTACCTTCCCCTATATTTCACTTACCTTTTCTTACACCATAGCTAATTGTATATCCCGAAAAGCATGTCATTGACTGTTTTGGCTTTGCTACTTTCATGTCGAGTTATGATAAAAGAGCATTTTTGCAGACGCAGACTTTTAGTAAGTCGGGGACGTCATGGACTGAAGGCAGTAGAGGTTAattggttttaagaaatgtttataTGTCGCCCTCTTGTGGAATTATTTAGGTACAACAACGTGTTGTGTAGGATCCAAATGATTGTTTTCTCCTCATCCCTGTGTTACGTCCTATTATCAGTCATAAACAGAGAGCAATACACTTTAATAGTAAAGAGGTAACACTCTgcttcacccaatgtgatacggtatcgctatcattttttttattattttagaacacattcaagaacctccagaagctaactagctaaaagcTATTTAGTCATAGTTAGCcaatgctagcggcttttaccttctgcacagataccagccctgttcttagcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585316 lncRNA upstream 12214 49283715 ~ 49335105 (+) True G516012
TU585360 lncRNA upstream 13337 49333040 ~ 49333982 (+) True G516038
TU585306 lncRNA upstream 56845 49270614 ~ 49290474 (+) True G516006
TU585186 lncRNA upstream 86687 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA upstream 100866 49242210 ~ 49246453 (+) True LOC110526066
TU585368 lncRNA downstream 1697 49386697 ~ 49387212 (+) True LOC118964898
TU585346 lncRNA downstream 118532 49503532 ~ 49506083 (+) True G516029
TU585416 lncRNA downstream 162981 49547981 ~ 49565332 (+) True G516089
TU585420 lncRNA downstream 172969 49557969 ~ 49567767 (+) True G516093
TU585423 lncRNA downstream 173180 49558180 ~ 49582072 (+) True G516094
XR_005052148.1 mRNA upstream 43963 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 100819 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 157512 49188175 ~ 49189807 (+) True LOC118964897
XM_021604928.2 mRNA upstream 159985 49183861 ~ 49187334 (+) False edf1
XM_036980364.1 mRNA downstream 133592 49518592 ~ 49522715 (+) True LOC118936463
XM_036981758.1 mRNA downstream 168029 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 289141 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 363788 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 510848 49895848 ~ 49897364 (+) False spaca9
TU585313 other upstream 40179 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 100866 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 159996 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 393028 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 759431 48551619 ~ 48587888 (+) False G515189
TU585370 other downstream 1514 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 364188 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1335401 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1526828 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2893493 52278493 ~ 52278998 (+) True LOC110493840

Expression Profile