RNA id: TU585370


Basic Information

Item Value
RNA id TU585370
length 350
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC118964898
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49347319 ~ 49387212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcctttgcttttcaatgaccaaactcaggatcaacttcaagcgttccaagagaggaaacaaaaaggactgccattcagtccaagaccagactgagattccctctactgatggacattgcatagctcaagttggagaggtttctccctccatatctcagcctgtcaaaaaacgatccttgattgtcagggtcttttcagcaatgatgaagccattcaggcgcttcaccaagaagaacctggaacctgttacgctgcatgaagaactacttttgtaacagcaagacttttgacaagaggaatttctgcatgtctaacctttcaaagtctatttgatcaaataaatgccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585367 lncRNA upstream 1514 49347319 ~ 49385000 (+) False LOC118964898
TU585372 lncRNA upstream 27498 49357761 ~ 49359016 (+) True G516047
TU585316 lncRNA upstream 51409 49283715 ~ 49335105 (+) True G516012
TU585360 lncRNA upstream 52532 49333040 ~ 49333982 (+) True G516038
TU585306 lncRNA upstream 96040 49270614 ~ 49290474 (+) True G516006
TU585346 lncRNA downstream 116320 49503532 ~ 49506083 (+) True G516029
TU585416 lncRNA downstream 160769 49547981 ~ 49565332 (+) True G516089
TU585420 lncRNA downstream 170757 49557969 ~ 49567767 (+) True G516093
TU585423 lncRNA downstream 170968 49558180 ~ 49582072 (+) True G516094
TU585425 lncRNA downstream 172484 49559696 ~ 49583560 (+) True G516096
XM_036980344.1 mRNA upstream 20620 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 83158 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 140014 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 196707 49188175 ~ 49189807 (+) True LOC118964897
XM_021604928.2 mRNA upstream 199180 49183861 ~ 49187334 (+) False edf1
XM_036980364.1 mRNA downstream 131380 49518592 ~ 49522715 (+) True LOC118936463
XM_036981758.1 mRNA downstream 165817 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 286929 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 361576 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 508636 49895848 ~ 49897364 (+) False spaca9
TU585313 other upstream 79374 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 140061 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 199191 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 432223 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 798626 48551619 ~ 48587888 (+) False G515189
TU585910 other downstream 361976 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1333189 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1524616 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2891281 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 3264728 52651940 ~ 52655297 (+) True G519603

Expression Profile