RNA id: TU585706


Basic Information

Item Value
RNA id TU585706
length 564
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC118936342
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49379716 ~ 49385907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585751 lncRNA downstream 8773 49367999 ~ 49371049 (-) True G516364
TU585670 lncRNA downstream 37323 49299725 ~ 49342499 (-) True G516304
TU585733 lncRNA downstream 55818 49299510 ~ 49324004 (-) True G516347
TU585660 lncRNA downstream 146301 49233143 ~ 49233521 (-) True G516300
TU585659 lncRNA downstream 146772 49232522 ~ 49233050 (-) True G516299
TU585757 lncRNA upstream 21019 49401841 ~ 49419385 (-) True G516369
TU585697 lncRNA upstream 47936 49428758 ~ 49431950 (-) True LOC118964901
TU585773 lncRNA upstream 83121 49463943 ~ 49494964 (-) True G516384
TU585776 lncRNA upstream 90609 49471431 ~ 49504382 (-) True G516386
TU585787 lncRNA upstream 147049 49527871 ~ 49542101 (-) True G516394
XM_021592749.2 mRNA downstream 30629 49346858 ~ 49349193 (-) False LOC110512256
XM_036980361.1 mRNA downstream 59464 49316279 ~ 49320358 (-) False LOC110512258
XM_036980362.1 mRNA downstream 59464 49316279 ~ 49320358 (-) False LOC110512258
XM_036980346.1 mRNA downstream 63429 49314225 ~ 49316393 (-) True LOC118964899
XM_021606665.2 mRNA downstream 139128 49233584 ~ 49240694 (-) True serpind1
XM_036980363.1 mRNA upstream 41607 49422429 ~ 49423820 (-) True LOC118964902
XM_036980354.1 mRNA upstream 46234 49427056 ~ 49429807 (-) False LOC118964901
XM_036980353.1 mRNA upstream 46234 49427056 ~ 49431260 (-) False LOC118964901
XM_036980357.1 mRNA upstream 46234 49427056 ~ 49431786 (-) False LOC118964901
XM_036980358.1 mRNA upstream 46234 49427056 ~ 49431786 (-) False LOC118964901
TU585712 other downstream 30686 49347470 ~ 49349136 (-) True LOC110512256
TU585703 other downstream 59410 49317044 ~ 49320412 (-) True LOC110512258
TU584888 other downstream 749517 48627038 ~ 48630305 (-) True prdm12b
TU584725 other downstream 999516 48375946 ~ 48380306 (-) True LOC118964892
TU584351 other downstream 1059234 48319747 ~ 48320588 (-) True G515139
TU585690 other upstream 154393 49535215 ~ 49536285 (-) True G516320
TU585710 other upstream 242227 49623049 ~ 49623743 (-) True LOC110515945
TU587323 other upstream 1264541 50645363 ~ 50651419 (-) False G517777
TU587446 other upstream 1530992 50911814 ~ 50922098 (-) True G517877
TU588286 other upstream 2187156 51567978 ~ 51569402 (-) False LOC110526143

Expression Profile