RNA id: XM_036980364.1


Basic Information

Item Value
RNA id XM_036980364.1
length 3357
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC118936463
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49518592 ~ 49522715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccgccaaaaatccactcgcagaacctcatcaccatgctgttcgcctaagagGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCGAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGGTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTAGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCGCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaagacacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGGTCTTCACAGAAGATAACCTTCTCTCTAGCCGGCACACTCTATGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTAGCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCGGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttagccgttgtcagttcatctgatgagtccctagaggcttgttggtttgttgatggtgtcctatcaaagcttgatgactaTACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGCTCAGAAGGGAGTGTCAGAATCACAGAGTCCTCAACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTTCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATTATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGGATCCGAAAGGACAGAAATGGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTCGAACCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACAAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCAACGACACCAGGGACAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCGAGTGCTAAAGTCTCTTTTCGATCCTCCACTCCGTCTTTCACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGGATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatggactccagcaaagatgatggcatctgttttgtcaccatactggtgataaggttgctatcggagatcagaccctcagccctagatggaccctcccaacaggcagcagatctgacagaaacatctcagcaactcatcagacaagtcctgtctgagttctgtgctgCATCCAGATTATCCAGGACACAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGATGTACATAAAAACCTCATGGAGGAGTTTGGCTCTCATAACACCCAGGAAGCAGCTATGTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtGCAGGGACGCAAGGAGGCGTCAAGACCAGCTTCTGCTGCAACAAACCCATCAGACCAGgctgagatggagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGACCAGACTGAGATTCGCTCTACTGATGGACATTGGATAGctccagttgGAGAGGGTTCTCCCTCCAAATCTCAGCCTGTCAAAAAACGATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTGTTACGCTGCATGAAGAACTACTTTTGTAACAGCAAGACTTTTGACAAGAGGAATTTCTGCATGTCTAACCTTTCaaagtctatttgatcaaataaatgccaatgattttacaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585346 lncRNA upstream 12509 49503532 ~ 49506083 (+) True G516029
TU585375 lncRNA upstream 106658 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA upstream 131380 49386697 ~ 49387212 (+) True LOC118964898
TU585367 lncRNA upstream 133592 49347319 ~ 49385000 (+) False LOC118964898
TU585372 lncRNA upstream 159576 49357761 ~ 49359016 (+) True G516047
TU585416 lncRNA downstream 25266 49547981 ~ 49565332 (+) True G516089
TU585420 lncRNA downstream 35254 49557969 ~ 49567767 (+) True G516093
TU585423 lncRNA downstream 35465 49558180 ~ 49582072 (+) True G516094
TU585425 lncRNA downstream 36981 49559696 ~ 49583560 (+) True G516096
TU585431 lncRNA downstream 45381 49568096 ~ 49592137 (+) True G516101
XM_036980345.1 mRNA upstream 131841 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 152698 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 215236 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 272092 49242039 ~ 49246500 (+) False LOC110526066
XM_036980343.1 mRNA upstream 328785 49188175 ~ 49189807 (+) True LOC118964897
XM_036981758.1 mRNA downstream 30314 49553029 ~ 49566639 (+) True LOC118965033
XM_021606690.2 mRNA downstream 151426 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 226073 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 373133 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 425923 49948638 ~ 50001016 (+) False grin1b
TU585370 other upstream 131380 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 211452 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 272139 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 331269 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 564301 48948617 ~ 48954291 (+) False LOC110526072
TU585910 other downstream 226473 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1197686 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1389113 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2755778 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 3129225 52651940 ~ 52655297 (+) True G519603

Expression Profile