RNA id: XM_036981758.1


Basic Information

Item Value
RNA id XM_036981758.1
length 2932
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118965033
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49553029 ~ 49566639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGTTTGTTGGCCATAGCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCTCCGCATTCTCCTACCAGCACTAGCTCGTATCATGGGGGTGAACCTGAGGAGTGGGGCAACCTCCCCAGAATCCCAGTGCTCTCTGACAGGGTCTGAGGATTCCTTAGGCggtctggatgagagagagaaaaggctactgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtgcaggatgccgccaaaaatCCACTCACAGGACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTGAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTTCTGATATCCCTGGTTGAGGGTCACTCCAACcccacctcctccagctcctccgagTTGAGCTGTGCTATCGTGGGGGAGGTGGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCCCGGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGCAGGCAAGGAGGTCATTCGGGTAGCCTCGGTTCAGATCCTGGCCGAGCTACAGAGCCAAACATCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGAGGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTAGATGTTGAGTGTCCATCTGGGAAGGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGATTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGCTCCTTCCTCTAGGCCTTCTAGTGCTGCTCCTAGCCTTACTGAAGCCCCGCTGAATACCAGCTGcacagccctgacatctgtaacctccactgccacagtgattgttaaggcatttgtgggaggcatggagacgatagcatcatttgaagacacatgtgaagcagttgattggccagttcctgtaaatgaccacaaaaCAGGGTCTTCACAGAAGATAACCTTCTCTCTAGCCGGCACACTCTATGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTAGCCGCTCGAGAAGAAGGTGTGGCAAAGGATGCTTCTCTTCGGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACACAGTAGAGTTCCCAGAGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttagccgttgtcagttcatctgatgagtccctagaggcttgttggtttgttgatggtgtcctatcaaagcttgatgactaTACTATTTCCCAGTCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAGTATTCTCAACTGAGCTCAGAAGAGAGTGTGATTCTGACAGAGTCCTCAACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTTCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTCAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGTGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCACAGTGCTCCCACGGGGGCTCCCAACTGGATTATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGAACATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCATCCGAATCCGAAAGGACAGAAATGGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTCGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGAttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTCGAGCCTGTTCATCTTTATCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGGGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTTGATCTGACCTGCCCCATCGTCAGGAGCTCCTGCATCGACACCAGGGACTCTAAAATGCCAGAGATTTCTACAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACCCCTGCATCGTAACAGTCCAATGACTGACAGCAGCCGACCACCGAGTGCTAAAGTCTCTTTTCGATCCTCCTCTCCGTATTTTACCAGCAAGGGAACCTCTTTGGTACCAAAGGGAGAGGGGATTGACATTGAAGAGAAGGAGGTGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCATCCCGGACATCAGCAGTGCCACTgcattcccactgcaAGTCTCCCGCATAACGACGGAGCAGATAAAGCAGTACTGGGTAGAGCTGGTGGGGCTTTCAGAATCCAGCCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585346 lncRNA upstream 46946 49503532 ~ 49506083 (+) True G516029
TU585375 lncRNA upstream 141095 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA upstream 165817 49386697 ~ 49387212 (+) True LOC118964898
TU585367 lncRNA upstream 168029 49347319 ~ 49385000 (+) False LOC118964898
TU585431 lncRNA downstream 1457 49568096 ~ 49592137 (+) True G516101
TU585336 lncRNA downstream 33637 49600276 ~ 49604284 (+) False G516025
TU585333 lncRNA downstream 78266 49644905 ~ 49645732 (+) True G516025
TU585838 lncRNA downstream 101610 49668249 ~ 49668546 (+) True G516441
TU585840 lncRNA downstream 103101 49669740 ~ 49669942 (+) True G516443
XM_036980364.1 mRNA upstream 30314 49518592 ~ 49522715 (+) True LOC118936463
XM_036980345.1 mRNA upstream 166278 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 187135 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 249673 49302665 ~ 49303356 (+) True LOC118964903
XR_005052142.1 mRNA upstream 306529 49242039 ~ 49246500 (+) False LOC110526066
XM_021606690.2 mRNA downstream 107502 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 182149 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 329209 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 381999 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 381999 49948638 ~ 50001016 (+) False grin1b
TU585370 other upstream 165817 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 245889 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 306576 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 365706 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 598738 48948617 ~ 48954291 (+) False LOC110526072
TU585910 other downstream 182549 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1153762 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1345189 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2711854 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 3085301 52651940 ~ 52655297 (+) True G519603

Expression Profile