RNA id: XM_021606690.2


Basic Information

Item Value
RNA id XM_021606690.2
length 1750
RNA type mRNA
GC content 0.46
exon number 7
gene id cfap77
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49674141 ~ 49747277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCTTTAGAACGTTGACAACAATGGCAATCTCGCGACAATAGTGACGGAGGTGCAACCCACAGAGTTTGGTCAGAGATACTCAGAGTCGGTACTTTTGAGGAGTTGGGAAACTCCTTTGGAATCATATTAATGTACCTTGCTCATGATAGGACAAGGAGTGCTGTCCTTCAAATAGTGAATGGGAGTCAAACTGGGCGCCAGATCAAAAACCCAATATTAGCATTAATTTCGTCAACAAGAACtacaacattacaaatattttcCGAGATGTGAGATAATTAACTCGTTCTCTGTAATACCGTATTGCTTTGGAATTGTGACCTTATGTACTTTCGAGAAAAATAGGCAGGTTTCTCGAGTCATTccctgactttgagaagggattgcAAGACAATTAGTTTAGCAACTACGTGACAAAACATGACAACGTGAACGCGATTGGTCTACAGTCTGCTAGATAGACTTATATGTTCCTCCATTCATTCCTATTTGTATTCTCTCTGGTTTGGTGTACACTTTTCGTCAATGTTTGGCGTCTCGTTTCCATAACAACAGAAGATACCAACAGGAAGTACagagGTGTAACCGTCCTGAAACTGGAAATGCAGGCTTCTCGCGTCGGAGTGGTCAGGGACTCCATGCTGGCTAATCCTCTTTTAATTAGGCCAGCGCTTGGGAAGACCAAGTCTAAAGGGTTGACATGTCTTGGACCTGACTTTGTGTACGGAACTGTTGCGACCATCCAGGACGGAGGAGTCTCAGAAGCCTTGTCCAACTGGCACACACACTCCCTACCCACCAGTGGCAGTAGAGGCCACTCCAGGAGGCCTGGGAAGGACTTTGTGGCTCTGAACCGCGAGGGGGTGAAGTCTGGCCTGGTGACTGCCAAGGAGCATTATCAGTACCGCGCCACCCACGACAGGAGACAAGCCTCCCTTGCCAGAAGGGGCTCCCGTGTCCCTGTGCCCCCTCGCATCCCCCCTGACACTACCTTTGGCATCTCGACACAGCCATCCACTCCCATCTGTGAGCTTCTGGAGCACAAGTACGCTCAGCGCTGGTTAGAGGAGCAGCAGGCCAAGGAGAGAGCCCTGGAGGAGAGGCAGCTCAACTTGCCTAAGCTGGGCCGCATTCAGGAGACACGGACAACTCTGTTGAGGAAGAGTCGGCCGATGCCTGAGTCCACCCCGCTGTGGAAGCTTCCCCGCTTCCAGCAGGTTGGCCCAGCTCTGGACACATTCCGGGATCCATATGCTAGAAAGAAGGCCTTCAATGCACACTTCTCAGACTCAGTGGCACGGACAGGACAGCTGGGCCAGGGAACCTACACTGTGGGCTAAAACATACATAGAGAAGAGTCTATGTAGTAACTGTTGGGGTAGGGAGTAGGGGTGCAAAGTCTTATTTTCCAACCAGCCTTAATCAAATTGCTCTCAGATGCAAtcaacctatatatatatatatatatatatatatatattactcatACTGACAATATTATTATCATGGGATTTTACTGATTTCTACAACTCCTCAATTACAGATTGTACTTTGAGTTTGTTGGCAAAAAAACAGATATTGTACTTCCGGCCGGACTTACACTGTTACCACCACAAGGATTTGTAATATGTTTGTAGACTACACTACTCTTTAACTCAGCGAGAAGGTAAAGTACAAAACACTCAAATGCTATGAATGTGTTCCaggaaaaataaaggaaaaatattaAGTTATTCAAATATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585840 lncRNA upstream 4199 49669740 ~ 49669942 (+) True G516443
TU585838 lncRNA upstream 5595 49668249 ~ 49668546 (+) True G516441
TU585333 lncRNA upstream 28409 49644905 ~ 49645732 (+) True G516025
TU585336 lncRNA upstream 69857 49600276 ~ 49604284 (+) False G516025
TU585431 lncRNA upstream 82004 49568096 ~ 49592137 (+) True G516101
TU585888 lncRNA downstream 12361 49759638 ~ 49761610 (+) True G516489
TU586030 lncRNA downstream 148629 49895906 ~ 49896282 (+) True spaca9
TU586031 lncRNA downstream 150159 49897436 ~ 49899671 (+) True G516628
TU586056 lncRNA downstream 181132 49928409 ~ 49928968 (+) True G516649
TU586088 lncRNA downstream 189042 49936319 ~ 49936792 (+) True G516659
XM_036981758.1 mRNA upstream 107502 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 151426 49518592 ~ 49522715 (+) True LOC118936463
XM_036980345.1 mRNA upstream 287390 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 308247 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 370785 49302665 ~ 49303356 (+) True LOC118964903
XM_021606691.2 mRNA downstream 1511 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 148571 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 201361 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 201361 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA downstream 201361 49948638 ~ 50001016 (+) True grin1b
TU585370 other upstream 286929 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 367001 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 427688 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 486818 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 719850 48948617 ~ 48954291 (+) False LOC110526072
TU585910 other downstream 1911 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 973124 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1164551 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2531216 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2904663 52651940 ~ 52655297 (+) True G519603

Expression Profile