RNA id: TU585910


Basic Information

Item Value
RNA id TU585910
length 1008
RNA type TUCP
GC content 0.51
exon number 3
gene id barhl1a
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49748788 ~ 49753260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCAAAGTTGTTTTGGGATTTTCCAACTGGACAGTTGACTTGGTCTCAAATTGTAGTTTAAAAGTACGAAATTACCCAGTTGCCCTGTTCATATTTATCATGGAGGTCTCCACAAACGGGTCGAGTTTTGGTGTTGACTCTCTGCTGTCTCACAGACCAGCAAGCCCACACTTTTTGAAAGGAGACAGTTCGATCGAAAAATGCCGGTCTCCACTGGAGTTAAGCCCGAGGTCCGTCCTGGAAAGCAGCTGCTCATCTCCCTTCTCCCCGCGACCGGAGTCTGTCGAAGATGCAATGCACAGACATGATTTTGCACTGGAATCCTCGCTACAGCATGGGCAACTGCCCCAGCCACGGACAGTCGCATCATCTTTTCTTATTCGGGATATTCTTGCAGACTGTAACAAACCACTTGCAGCATGTGCCCCATACAAGAGTCATGAACATCCCATGCCAGACTCCGAGCATTTTGAGTCCAAAATAGCGGACGACTTTATGGATAAAATCCACAGCAACTCGTCCTCGGAAAATGAATACAAAGCGCGAGACCGTGACATGGACAGCAGCAGAGACAGTCCGTCGTCTCGGCTGAAGAAGCCCCGGAAAGCTCGAACCGCTTTCAGTGATCACCAGCTGGCCCAGCTCGAGCGCAGCTTCGAAAGGCAGAAATATCTGAGTGTGCAGGACAGAATGGAGTTGGCAGCTTCGCTCAACCTCAGCGACACTCAGGTCAAAACGTGGTACCAGAACAGACGAACGAAATGGAAGCGCCAGACCGCGGTTGGACTGGAATTGTTGGCCGAAGCTGGCAACTACTCGACTCTTCAAAGAATGTTTCCCTCGCCATATTTTTACACACAAAGTCTGGTTTCGAACCTAGATACCACAGCGGGCTTATATCTGTACAGAGGACCCTCGGCACCACCACCTATCCAGCGTCCGCTGTTTCCACGAATCCTCCTCAATGGTCTTCAGGGAGGCGGGGAGCCGCTCTCCTCTCTATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585840 lncRNA upstream 79246 49669740 ~ 49669942 (+) True G516443
TU585838 lncRNA upstream 80642 49668249 ~ 49668546 (+) True G516441
TU585333 lncRNA upstream 103456 49644905 ~ 49645732 (+) True G516025
TU585336 lncRNA upstream 144904 49600276 ~ 49604284 (+) False G516025
TU585431 lncRNA upstream 157051 49568096 ~ 49592137 (+) True G516101
TU585888 lncRNA downstream 7889 49759638 ~ 49761610 (+) True G516489
TU586030 lncRNA downstream 144157 49895906 ~ 49896282 (+) True spaca9
TU586031 lncRNA downstream 145687 49897436 ~ 49899671 (+) True G516628
TU586056 lncRNA downstream 176660 49928409 ~ 49928968 (+) True G516649
TU586088 lncRNA downstream 184570 49936319 ~ 49936792 (+) True G516659
XM_021606690.2 mRNA upstream 1911 49674141 ~ 49747277 (+) True cfap77
XM_036981758.1 mRNA upstream 182549 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 226473 49518592 ~ 49522715 (+) True LOC118936463
XM_036980345.1 mRNA upstream 362437 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 383294 49362031 ~ 49365894 (+) False LOC118964898
XM_036981761.1 mRNA downstream 144099 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 196889 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 196889 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA downstream 196889 49948638 ~ 50001016 (+) True grin1b
XM_021606704.2 mRNA downstream 299455 50051204 ~ 50054481 (+) False kazald3
TU585370 other upstream 361976 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 442048 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 502735 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 561865 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 794897 48948617 ~ 48954291 (+) False LOC110526072
TU586434 other downstream 968652 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1160079 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2526744 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2900191 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 4174193 53925942 ~ 53955130 (+) True G521552

Expression Profile