RNA id: TU586030


Basic Information

Item Value
RNA id TU586030
length 377
lncRNA type read_through
GC content 0.41
exon number 1
gene id spaca9
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49895848 ~ 49897364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTGAGACCACAGTGCTTCGTTGTCAATCATGTACTACACATCCGTGTCTATCATTTAGCAACATTCTGCGCTATTTGTAACTTTGTATCCAAATTAAAAAATATTGATACTGCTAGACTGACTCGGCACATAGACCCGCAGgtaaattgtatttattatgaCCTTTCCAGAGTTGTCTCGAAAATCCAGTACTTACATTGGTACAAGGCTGTCTGTCTAGAGACTTTGTCCAGAGCAGCAGAGTATATGTATTGGGCTGCAGCTCCATATTGTAAACTTATCCATCTCAAATGGCATTTTCCTGTTGACGAGTGTGCACAACTGGCAAGGGAGAGGTTGAAGGCCATTACACACTCACAACATCTTCAAACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585889 lncRNA upstream 134296 49713585 ~ 49761610 (+) False G516489
TU585888 lncRNA upstream 134296 49759638 ~ 49761610 (+) True G516489
TU585840 lncRNA upstream 225964 49669740 ~ 49669942 (+) True G516443
TU585838 lncRNA upstream 227360 49668249 ~ 49668546 (+) True G516441
TU585333 lncRNA upstream 250174 49644905 ~ 49645732 (+) True G516025
TU586031 lncRNA downstream 1154 49897436 ~ 49899671 (+) True G516628
TU586056 lncRNA downstream 32127 49928409 ~ 49928968 (+) True G516649
TU586088 lncRNA downstream 40037 49936319 ~ 49936792 (+) True G516659
TU586090 lncRNA downstream 42664 49938946 ~ 49939253 (+) True G516661
TU586093 lncRNA downstream 45138 49941420 ~ 49941621 (+) True G516664
XM_021606691.2 mRNA upstream 142646 49748788 ~ 49753260 (+) False barhl1a
XM_021606690.2 mRNA upstream 148629 49674141 ~ 49747277 (+) True cfap77
XM_036981758.1 mRNA upstream 329267 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 373191 49518592 ~ 49522715 (+) True LOC118936463
XM_036980344.1 mRNA upstream 530012 49362031 ~ 49365894 (+) False LOC118964898
XM_036980378.1 mRNA downstream 52356 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 52356 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA downstream 52356 49948638 ~ 50001016 (+) True grin1b
XM_021606704.2 mRNA downstream 154922 50051204 ~ 50054481 (+) False kazald3
XM_021606703.2 mRNA downstream 154924 50051206 ~ 50054481 (+) False kazald3
TU585910 other upstream 144157 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 508694 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 588766 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 649453 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 708583 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 824119 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1015546 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2382211 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2755658 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 4029660 53925942 ~ 53955130 (+) True G521552

Expression Profile