RNA id: XM_036980380.1


Basic Information

Item Value
RNA id XM_036980380.1
length 4604
RNA type mRNA
GC content 0.48
exon number 21
gene id grin1b
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49948638 ~ 50001016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATTTCAGGACCAAGGACAGACGCTCGCGCTGAGCATCAGGTCATTGGATCCTCAGCAAAGCAGAACCTCGGACGGAAGTCGTGACAAGGAGACATGCATCTCTCAAAGACAAAGAAACACAAGCTCTCCCAAAACTGTTTGTAGGCCaataatatatgtatttttttgttgcgTCAATGAAAATCAACAGGATTTACCCACCACAAAGCAAATGTGTTATTGTCTTTTTTATGGGAGTGTAATGCAGGTTTAGAGATCAGCTGGAGAAAAAACTCATGATGCACATACCTCGACAGGGCGGACTAATGTAATTGCATTCCACTGGTATTGCTGTTAGCACAGGGTCGAGAGAACGCGTGATCCATGCGGATCGGTTAGCTGGGCTGGCTACGACGCACATCCACTCAACAGGAGACTCGGTCTGGCAGCTGTGTCGATGTCAAAATGCGTGTATTTCTGCTTGCGTTTTTCATCTCCTGCTCCTGTGCGGGTGGTGGATGTGAACCCAAGATTGTCAATATCGGAGCGGTCCTGAGCCAGAAGAGGTATGAACAGGTGTTCAAGGACGCCGTCACCCAGGCAAACACTCTGTATGGGAAAGATAAGTTCAAGATGAACGCCATCTCTGTCACTCATAAACCCAATGCAATTCAGATGGCTCTCTCCGTCTGCGAGGACCTCATCTCGAACCAGGTGTATGCCATTCTGGTGAGCCACCCGCCTCAATCGAATGACCATCTGACCCCAACACCCGTGTCCTACACCGCAGGGTTCTACCGTATCCCTGTGGTTGGGCTCACCACCCGCATGTCCATCTATTCGGacaagAGCATCCACCTGTCTTTCTTGCGTACCGTGCCCCCCTACTCCCACCAAGCCCAGGTGTGGTTCGACATGATGAGAGAGTTCCGCTGGAACCACATCATTCTGATAGTGAGTGACGACCACGAGGGCCGTGCTGCCCAGAAGAGGCTGGAGACCctgttggaggagagggagaccaaGAATAAAAACAAGAACTATGAAAACCTCGACCAACTGTCCTATGACAACAAGCGAGGACCCAAGGCAGAGAAAGTTCTCCTGTTCAGCCAAGACACCAACCTGACATCCATGCTGCTGGAGGCCAAGGACCTGGAGGCTCGCGTCATCATCCTCTCTGCCAGCGAGGACGAAGCGGCGTCGGTCTACAAAGCTGCCCGCCAGCTCAACATGACGGGCTCTGGCTACGTGTGGCtggttggagagagggagatgtctgGTAAAGCTTTGAGTGAAGCACCAGATGGCTTGCTCGGCCTTCAGCTCATCAACGGCAAGAACGAGTCGGCGCATATCAACGATGCCGTGGCTGTGGTGGCACAGTCCATCCAGGAGCTCTTTGAGAAGGAGAACATCACAGAACCGCCTCGCGGCTGTGTAGGCAACACAAACATCTGGAGGACTGGACCGCTCTTCAAACGAGTGCTGATGTCATCCAAGTACCCAGATGGCCTGACAGGACGCATCGAGTTTAATGACGATGGTGACAGGCGGTTTGCTACCTACAGCATCCTCAACTACCAAAAGACCAGGCTGGTGCAAGTGGGCATTTTCAACGGCACGCAAGTGGTGATGAATCCGCAGAGGAAGATAATTTGGCCaggaggagagacggagaagCCAAGAGGATACCAGATGTCTACCAGACTAAAGATAGTAACCATTCATCAGGAGCCATTTGTCTATGTCCAACCTACAACAAGTGACGGAACTTGCCAAAAAGAGAAAACTGTTAATGGACTTAAAGATGTCCAAAAAGTTATATGCACTGGCCCCAATGGAACCATCCCAGGACAGCCTATAGTACCCCAATGCTGCTATGGCTTTTGCATTGACCTCTTGATTAAACTAGCGGATACCATGAACTTCACCTATGAGGTTCATCTGGTGGCTGATGGGAAGTTTGGTACACAGGAGCGGGTGAACAACAGCAACAAGAAGGAGTGGAACGGCATGATGGGAGAGCTCCTGGGTGGCCTGGCAGACATGATTGTGGCTCCGCTCACGATCAACAACGAACGCGCCCAGTACATCGAGTTCTCAAAACCCTTTAAGTACCAGGGGCTTACCATCCTCGTGAAAAAGGAAATACCACGCAGTACTTTGGATTCGTTCATGCAGCCCTTTCAGAGCACCCTGTGGCTGCTGGTGGGTCTATCGGTCCATGTGGTGGCGGTGATGCTCTACCTATTAGACCGGTTCAGCCCATTTGGAAGGTTTAAAGTGAATagcgaagaagaagaagaggacgcCCTCACCTTATCCTCCGCCATGTGGTTCTCTTGGGGGGTCCTTTTGAACTCCGGGATAGGAGAAGGAGCACCCCGGAGCTTTTCAGCAAGGATCTTAGGTATGGTGTGGGCTGGATTTGCCATGATCATTGTGGCATCCTACACAGCCAATCTGGCAGCCTTCCTAGTGTTGGACCGGCCTGAGGAGCGCATCACCGGCATCAATGACCCCAggcTGCGAAACCCATCAGACAAGTTCATCTACGCCACAGTGAAGCAGAGTTCGGTGGACATCTACTTCCGGCGCCAAGTGGAGTTGAGCACCATGTACCGCCACATGGAGAAGCACAACTACGAAAGCGCTGCTGAGGCCATCCAAGCTGTGCGCGACAAtaaaCTGCACGCGTTCATCTGGGACTCTGCCGTCCTGGAGTTTGAGGCATCACAGAAGTGTGACTTGGTGACAACGGGAGAGCTGTTCTTCCGCTCCGGCTTCGGCATAGGCATGCGGAAGGACAGCCCTTGGAAGCAAAACGTTTCCCTGTCCATTCTTAGCTCTCATGAGAATGGGTTCATGGAGGAACTAGATAAAACCTGGGTGAGATACCAGGAGTGTGACTCCAGGAGTAATGCCCCGGCCACCCTCACTTTTGAGAACATGGCAGGTGTGTTCATGTTGGTTGCTGGGGGTATCGTTGCTGGAATCTTCCTCATCTTTATTGAGATTGCGTATAAGCGCCACAAAGATGCCCGCAGGAAGCAGATGCAGCTGGCCTTCGCTGCGGTCAACGTGTGGAGGAAGAACCTACAGgaTAGGAAAAGTGATAGAGCAGAGCCTGACTCCAAACAGAAAACCTCTTTTAGGTCCATCAGTACCAACCTGGCCTCCAACATCAAGAGACGTAGGTCCTCCAAAGACACGCCTTATCCCACGGACATCACAGGCCAGCTCAACTTGTCAGACCCTTCTGTCAGCACGGTGgtgtgagagattgagagaaatgAGAGGACTGAAATGAGAGAGAGGATCCTGGTTTGGAGACAGAAGCTGGTCCATTGCTGCTACGCCACCTGAGCCATTGCCCATCCTGTTCTCTATCTACCCACATAGAACATGTGTTCTGCTCATTCCCCACCAAACACAACAGGCAGGAACTGGATAGCTGACATCCCACTGACAAACTGTGCCAATTCACAATGGAGCCAAACCACCTGTTTTTTCCCACACAGAGGCCTGACCCAGCACAATGATAGCTTTAGGTTTATTTTTATAATCTGCCTGCTAGAGTCATGTAGTTGTGTACTTTACGTGTGAAACAAcaagaaatatatacattttctgaTCATGTCATTCGCAATACATCGTCATGCACTGTGTTTCTGATTTCATTAAGCGATAGATTTAATAGATCATGTTTAAGAGTATTTTGTGATTGTCAATGTCTTACTACCTCCACTTATTTAGACGAACCTTAGACATGTAGGCTACTGTAGTTAGAACTATTTGACATTGTAAGGTTTTCCTGGGTTGCATTTATCGACAGGTTTTTGTTAGCATTAGCTAATGCGGTGTAGTGTGGGGCAATAACAATGGACAAGTTGTCAATTTATAAATTAGCAGCATACAGCTATGCTAATATCTAAGTGTAAATCCGAGTTAAGCACACTTTGTCCATTGTAGCACTCATATCAGCTGCAATCCCTTTCTTTAGCTATAGATGTCTTAGCCCCTTTTATGTGTTCATTTACTTCATTCTCCCAGTGGTAGTACAGCAGTGATTGCGTGGCAGACTATTCTCAGCATTCAACAATACTACAATCTTTCTGAGCCAAAAGTCTTTGGCATGACATCGGTGAAGGAGTTGCCATCAACAGAAATAGACTGGTAACCACTAGTGCTGTAGGCTATGTTGTTGTTCATTCAAGAAAATTGCTCTCTACATTTGTTGATTTGACAGTGTTACATGGTCAttaatgcaaatcaatttatcaGTCAACATCAAGTCTCTATATAGcctatatagtgccttcagaaagtattcataccccttattcCAAATGTTgtcttgttacagcctgaattcaaaattgattaaaaaaacatttgtctcgcccctctacacacaataccccataatgacaaagtgaaaacatgtttttagacatttttgtaaatgtattgtaaAGGAAATACAAACATATctaatttccataagtattcacacccctgagtcaatactttgttgaagcacctttggcagcgattatagctaggagtctttctgggtaagtctctaagagctttccacacctggattgtgcaacattt

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05208 GRIN1; glutamate receptor ionotropic, NMDA 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586093 lncRNA upstream 7017 49941420 ~ 49941621 (+) True G516664
TU586090 lncRNA upstream 9385 49938946 ~ 49939253 (+) True G516661
TU586088 lncRNA upstream 11846 49936319 ~ 49936792 (+) True G516659
TU586056 lncRNA upstream 19670 49928409 ~ 49928968 (+) True G516649
TU586031 lncRNA upstream 48967 49897436 ~ 49899671 (+) True G516628
TU586120 lncRNA downstream 5265 50006281 ~ 50006631 (+) True G516691
TU586121 lncRNA downstream 9124 50010140 ~ 50010708 (+) True G516692
TU586125 lncRNA downstream 12595 50013611 ~ 50013812 (+) True G516696
TU586129 lncRNA downstream 24501 50025517 ~ 50025776 (+) True G516700
TU586154 lncRNA downstream 48695 50049711 ~ 50050023 (+) True G516725
XM_036981761.1 mRNA upstream 51274 49895848 ~ 49897364 (+) False spaca9
XM_021606691.2 mRNA upstream 195378 49748788 ~ 49753260 (+) False barhl1a
XM_021606690.2 mRNA upstream 201361 49674141 ~ 49747277 (+) True cfap77
XM_036981758.1 mRNA upstream 381999 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 425923 49518592 ~ 49522715 (+) True LOC118936463
XM_021606704.2 mRNA downstream 50188 50051204 ~ 50054481 (+) False kazald3
XM_021606703.2 mRNA downstream 50190 50051206 ~ 50054481 (+) False kazald3
XM_021606705.2 mRNA downstream 50197 50051213 ~ 50054481 (+) True kazald3
XM_021606710.2 mRNA downstream 71310 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA downstream 71334 50072350 ~ 50086959 (+) True rsph14
TU585910 other upstream 196889 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 561426 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 641498 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 702185 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 761315 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 719385 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 910812 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2277477 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2650924 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3924926 53925942 ~ 53955130 (+) True G521552

Expression Profile