RNA id: XM_021606704.2


Basic Information

Item Value
RNA id XM_021606704.2
length 2347
RNA type mRNA
GC content 0.41
exon number 4
gene id kazald3
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50051204 ~ 50054481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGTATAGACCGATATCCTCCTGTTCCTTCTCTCACTGTTCTTGGGAATTGCTGGATGCTTTAAAACTTAATCATATTTTTCCTAAATCTAGGCTACAATGCAGGTTTGTTGAATGACATTCTGTTTTTTGTTGTAAAGCACTGGGCTGTGCATTCTCAGCGATCTTCGGGAGAAATATTGTCCAACAGTTGTTGAACAACCCCAATCCAACCATTGGAATGTATTTGGAAGTTTCATATCGGAAATGAAAGGATACACTTTGAAGTGGACTGTGTAATGATTTTTTAGACCTATAGTGGATTATATTTTTCTGCTAAAGTGCTGTAACGAAAAGTGCTATAAAAAATCATAGAAGACCAGCAGTCAGTCAAAATGCAATGGGAAATAATACTTTGCGGAATTATGTTTTTGCTGAACATGAGAACTTGTGAAAGCTTCCCGAACAAGTTTGATGAGGACATTGACAAACGTATAGACCCATTAGATTACATTATCGATCCATTAGATTATGATAGGCTTGAGGATCAGTTTGATAGAAATGTAACTGCTTGTGGTGAGTGCTCACCTGAATTGTGTCCTGTGGCACAAGAATGCAGGGCTGGGCTCATTTTGGACAGTTGTGGTTGCTGCCAAGAGTGTGGAAATCTAGAGGGGCAGACGTGTGATATTGGCGACATTAATGTATTTTACGGTCTCTGTGGGACGGATCTTCAATGCAAAATTGACGATTTGGATGTTGGAGATGGAGAAGTTGCGGAGCCGCAGTGCGTCTGTCAATCGCAAGATGCGCTTTGTGGTTCCGATGACAGAACATACATGAACAATTGTCAGTTTAAAGAAGCGTACTTCTCAAATTCAGCACTCAAGATAAAGCGCAAAGGTCCATGCAAAACAGTGCCGATCATCAAGGTCCCACCCCAGAACCTGGTGAATGTTACGGGTAGTAGCATGGTGTTCCTCTGTGAGGTCTTTGCCTTTCCAATGGCAATGATTGAATGGAAGAAGGATGGCAGAGACATTATTCTTCCAGGAGATGACCCACACATATCTGTCCAGTCTCGGGGTGGTCCCCTGAAGTATGAGCTCTCTAGCTGGCTGCAGATCGAGAAAGCTGGCCTGGCCGATGCTGGCACCTACCGCTGTGTCGCTCGGAACGAGCTCGGCAGCATCTCTGCAATGGCTGTGTTAGGAGTTCTAGGTCCAGAGATGTCCGTCTACTTGACGGAGAACGTGACGGAAATGTTGGAGTATGGCCACTCGGAGAGAGAGTATGATGAGGATTACTACTAGTGATGTCCTCCGTTGTAAAGAATCAGCCCTCACTAACGGAGGTGCTGATGGCATCCTGAAAGTCTTCACAATTGTTGTAGTGTTGCACATGCATATTTTGTACAACTGTTCAGCTTAACCCCATGTTTTCATCTCTACATCTGTAGTCAAGATGGTGAAAGTGGAGATGTGAACGTGATATATAACAAAAGCATAGGTGAATATGTGTGGAAGTTGATTAGGGAAGCGTCTGATCATTCCTGAAGTCTATATTGTACACTatatagtactgaaagcataaggaATGAATGTCTCTTTGTTCAAAAGCTGTTCAAACCCATTTTCCTTGTGACTATAAGTCTACATTCCAAAGTGCAGGAAAGTTGTCCTGTTACTGTCTGGTAAAAGGTTTAGCCATCCCCTCAGGATGAACCTGGCATGTGTGCAACCAATATGTGCAACTGGATGTACTCTATGTGGAATGTCTAGGTGCATTGTTGTGTCTCAGAACTGGAATGTACATTTAGCTGGTTTATAGGTTTCTATCTATCGCTGTAATGCTTGGGAAGATGTGTCAGTAAGCCAAGCCCAGCTCTGGTCATGGTGGAGAGAAGCCCACAGATGGTTTTAATGTTTTTGTGCAGCTCAGACATGAAGAGAAACACCATCTCCTTTGTTCTTGTGTCAACAAGGTTCTATTTCCTTTTCTAAGAGATTATGGACTACCTTGGACTTGATCTAAATATAGTCATTCCTACTACATCTACGCAAAGGAAGCAACATCAGACTAAGAATATTATGAATATATTATATAACAAATTATATTACAAAGATTTGTTATATTATGCTACTTCTGAATATTACAATATATCAAATCATCTCAAATGGGATATATGTTTTTCCAAATTATTTATGCTTTCAtctggataaaaaaaaatctgtatggACAAATTAAATGTAAAATGCGTACATTTTGAAGCGGTGATGGCTTACTacatactgttactgttactgttacataTTGCATTCCCAGAAGAAAGAAATATGCAATAAATGAAAAACAGTAATCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586154 lncRNA upstream 1181 50049711 ~ 50050023 (+) True G516725
TU586129 lncRNA upstream 25428 50025517 ~ 50025776 (+) True G516700
TU586125 lncRNA upstream 37392 50013611 ~ 50013812 (+) True G516696
TU586121 lncRNA upstream 40496 50010140 ~ 50010708 (+) True G516692
TU586120 lncRNA upstream 44573 50006281 ~ 50006631 (+) True G516691
TU586165 lncRNA downstream 34203 50088684 ~ 50089008 (+) True G516734
TU586175 lncRNA downstream 36686 50091167 ~ 50091585 (+) True G516744
TU586176 lncRNA downstream 37594 50092075 ~ 50092450 (+) True G516745
TU586179 lncRNA downstream 41727 50096208 ~ 50096449 (+) True G516748
TU586182 lncRNA downstream 47351 50101832 ~ 50102060 (+) True G516751
XM_036980378.1 mRNA upstream 50188 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA upstream 50188 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA upstream 50188 49948638 ~ 50001016 (+) True grin1b
XM_036981761.1 mRNA upstream 153840 49895848 ~ 49897364 (+) False spaca9
XM_021606691.2 mRNA upstream 297944 49748788 ~ 49753260 (+) False barhl1a
XM_021606710.2 mRNA downstream 17845 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA downstream 17869 50072350 ~ 50086959 (+) True rsph14
XM_036980384.1 mRNA downstream 52311 50106792 ~ 50187218 (+) False LOC110526093
XM_036980385.1 mRNA downstream 52314 50106795 ~ 50197130 (+) False LOC110526093
XM_021606711.2 mRNA downstream 52315 50106796 ~ 50197130 (+) False LOC110526093
TU585910 other upstream 299455 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 663992 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 744064 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 804751 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 863881 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 665920 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 857347 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2224012 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2597459 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3871461 53925942 ~ 53955130 (+) True G521552

Expression Profile