RNA id: XM_036980384.1


Basic Information

Item Value
RNA id XM_036980384.1
length 3141
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC110526093
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50106792 ~ 50208464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTAGCTTGCTATCAGTCACAGCAGCCTCAGCTTGTCCCCGTTGCCAGGCATAGCTGCTGGACACAAATATTGTTAGGTGAAACTACTGCTTCGAGAACTTTCGATTTTTTTTGTAGCTTTTTGGTAATACAATTTAATGAAAAGGGAATACATTTGTCTGCTTTAATAAACTGTGGAAGGAAACTGATCATCTGGAAGAGGACAATTTTCAGGTCAGAGCTTGGGATGAATAACCCCAAAGTGACAGAAATGATTCCTTTTCTTGTCTGAGTGAAGCCTCATCAAGAGAATTATTTTTTGTCATCCTATAAAATGATGCCAAAGCAGCTGGCCCGCACCTCACCTGGGAGTGTGTGTTCCCTCCGTGGTATCAGCATCCCAGGATCCCTAGCCGTGGCCATCACAGCCAAAATGGACAATCAGGTCATTGGCTATAAGGACTTGGCAGCCATCCCCAAAGACAAGGCGATACTGGACATCGAGAGGCCGGACTTAATGATCTACGAACCCCATTTCAATTACACGCCTCTGGAGCTATCGGAGGTGCCCCGAAGCAGAGAGaGGTCCATGTCTCCGTGTTCATTCTCCCACCCGGCTTCTCCTGAGACCATTCTATTCAAGGATCCCAAGGAGTGGCTGGAGAGCAGGGAGTCACCTGGAGGGTCATCAGCAGGTTCAAACCTCCAGCTCAAAACCAGCTCTGCATTAGACACCGCCACCAAGCTCCCCACACAGCACTTTCACAGGCCAGATAATGGAATGAATATATACAAGAAGCCACCAATTTACAAACAAGaTGTATTAGCATCCATCCCCCAGGGGAAACACATAGAGGATATCATCATTGAGTCATCTAAATTCCCTGCCGCCCAGCCACCTGATCCCAACAAACCCTCCAAGATTGAGACAGATTACTGGCCCTGCCCCCCCTCCCTGGCTGCAGTTGAGACAGAGTGGAGGAAGAAGGCTGAGTCccggaggagggaggagggagagagggatgaggaagacGATGAATATGACAATGGAGACCTGTCCGATGATATGTGGGGACTACGGCAACTGCAGAAGCAGGAGCTCAACAAAATTCAGTCGAACTTGGGAAAGATAATCTTGAAAGAGGAGCTGGATAAAGCTGTGCCCATCCGCAGGAAAACTCGCTCACTGCCTGACCGGACAGCAATGCACATGGGGTCATCCTCCAATGCCTCCAAAAACATACATTTCCGAGCAACCAGTAGGAGTGGTCAGACCAGGCTCCAGTCTGCCGAGTTCACCCAATCTGACAGTGACAAAGGAGGACCAGtttGTAGTGGCACAACCGAGTGGGAAGGTATAAATGAGCCTGCCAATAAAAGAAAAGACCCTTCAAAGTGGAAAGGAGAGGTTGAGATGAGAAGGAGGATGGAAGGTAAATCCTACCTTGGCAGGAAAAAGATGATTGAGTTGACTTTGGCAATTGATTATTTACAGTATTACTTATATGATTCTTACCTGAATACCTACTTTGATGTTTAATTCCATGCTAAAATGTGTCTGATTTgcgtaaaaatactttaaagtactacttaagcagttttttggggggtatctgtactttactatttatatttttgattacttttacttttactccactactttCCTAAAGAAAtaatttactttttactccatacatttgcCCTGAggcccaaaagtacttgttacattttgaatgcttagcaggagagAAACATTttctaattcacgcacttatcaagaggacatccctggtcaaccctactTCCTctcatctggcagactcactaaatacTAATGCTTTGTTTGAAAatgatgtgtgtgttggagtgtgcccctggctactCGTAAACTTAAAACAAGAAAACCGTGCtgtctggttttcttaatataaggattgtgaaatgatttatacttttgatacttaagtgtattttaaaccaaacacttttagacttttactcaagttgtattttactggtgactttcacttttacttgagtcattttctatcagGGTATCTTTACCCTAGTATTTCGATATTGATTCTTGTTTGACTGTTGCAACACATACCTGATCCTCCTTTATTTCATTCTGAGTGAAAAATGAAACATCACACTTGGTGTAAATCTTTTTAGTTGTCAAACACCATCACATGTATTTGAAATTATATTGGGAAATACATTTTCAGTAATGCTATTGAAATTATAAAATGATTCCAATGTCTCGTACCATTGACCTTTTTATGAAATTGATCACATTGATAGAGTCTACAGACTTTGACAGTCTTATTTGGAGACTACCTGTGCTGGAGGACGTTTGCAAGATGGTGCTGGCAGGATTAAATAATAAATTAATGTCAAATCAATTGCACAACGTTGTTGTCCTCTTTGTTTGCTGTCACAGTTTACCATAAGGTGTAAAAAATGCAAACTAAATTTGTAACTAGTACTTAAGTCGTTTTCTGACCGGATACTTTTTTATATACTTAAGAGTAGTTTATTTTACTTGAATAAATTACAATCTAAGTAGCACTACTTTTCCTTAAGTACAGAATTTCAGTACTCTACCCACCTCTGCAAATTATACATAGCCTAACTATAAAATGTTGGCAAGCATCCACACCGGAGGAAAGTTTATCGTTCTACAGTAGGCGTACATCTGTCAAACAACTGATTACCCAAATCAGCTCATCAACTCAGCCAGGGAAACAAACAGTagcctattgttttttttacacattttattatGTGACAATGAATAGACTAAAGGGTAGCATACAAAATGTACCCTATTGAAATATAATTAAATAACAAGGGCCTATTGCAACCATCGATGGAACTAGATTATCACCAGTTGATGTCCCGTTAAACCATCAATATGTGCTAAATTCACATCTCAATTGCAAACATTATTGGTCACCTCATTACCGCTCCCTAAAAGATGTCAGTGTTTGTTTACCTTAGTCAGAGATCTGTAAAAttacgagatgctcatgtctccgcacTAACAATGGGAGTTGTTGTCCAAAAGGCAGGAAAGGAAGGCAGGCAATAAGTCTCTAGGTCTGCATGTTAagcccatatacagtgccttgcgaaagtattcggcccccttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586182 lncRNA upstream 4732 50101832 ~ 50102060 (+) True G516751
TU586179 lncRNA upstream 10343 50096208 ~ 50096449 (+) True G516748
TU586176 lncRNA upstream 14342 50092075 ~ 50092450 (+) True G516745
TU586175 lncRNA upstream 15207 50091167 ~ 50091585 (+) True G516744
TU586165 lncRNA upstream 17784 50088684 ~ 50089008 (+) True G516734
TU586156 lncRNA downstream 9010 50196228 ~ 50208464 (+) True LOC110526093
TU586357 lncRNA downstream 196788 50384006 ~ 50385057 (+) True G516918
TU586372 lncRNA downstream 246514 50433732 ~ 50433997 (+) True G516933
TU586408 lncRNA downstream 286311 50473529 ~ 50506298 (+) True G516964
TU586449 lncRNA downstream 332621 50519839 ~ 50536407 (+) True G517000
XM_021606710.2 mRNA upstream 19833 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA upstream 19833 50072350 ~ 50086959 (+) True rsph14
XM_021606704.2 mRNA upstream 52311 50051204 ~ 50054481 (+) False kazald3
XM_021606703.2 mRNA upstream 52311 50051206 ~ 50054481 (+) False kazald3
XM_021606705.2 mRNA upstream 52311 50051213 ~ 50054481 (+) True kazald3
XM_036980386.1 mRNA downstream 11124 50198342 ~ 50299370 (+) True si:dkey-220o5.5
XM_021606712.2 mRNA downstream 112864 50300082 ~ 50312773 (+) False fam160b2
XM_021606713.2 mRNA downstream 112865 50300083 ~ 50312773 (+) True fam160b2
XM_021606717.2 mRNA downstream 152817 50340035 ~ 50417982 (+) False adam9
XM_036980388.1 mRNA downstream 152829 50340047 ~ 50417982 (+) False adam9
TU585910 other upstream 355043 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 719580 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 799652 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 860339 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 919469 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 533183 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 724610 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2091275 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2464722 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3738724 53925942 ~ 53955130 (+) True G521552

Expression Profile