RNA id: XM_021606713.2


Basic Information

Item Value
RNA id XM_021606713.2
length 3233
RNA type mRNA
GC content 0.47
exon number 17
gene id fam160b2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50300082 ~ 50312773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTCatatttatacatccggtgaaacatCTGGCTAGTTCTATCTGTGGCAATATCGTATTTGGAGCTAGCAAACGGAAAAATGTTTACCATGTTTTGTAAAACGTTTTATTAATTCGACGAAAATAATGGATATGTTCAGTAAACTGACACACCTCTTTCAACAGGCGTTGGAGACCAGGGAGCCGCCAGTAAATTTATTGGACTCTTTTGTGGACCACTGGAAAGGGATAACCAATTATTACATTGAAACTACTGGTCAAACGAGGCCTGTAAAGCAGACAGACATTCCATGGCGATTGAAGCAGATGCTGGATATCTTAGTTTTCGAAGAGGCCCAACAGGGGCAGGAGGAGATGGGCCCTTGTATGGAGTACCTCCTACAGCACAAACTGCTGGAGACCCTCTGCACCCTAGGCAAAGCacagTACCCCCCAGGAATGAACCAGCAGGTCCTGGTGTTCTTCTCCAAGATCCTGGTACAAATCCAAAAGCCAATGCTTCACATCCTCAATGTGTATAGGCCAGTCCAGAAGCTGGTTCGTCTGTGTGGTCTTCCGGGATCGCAGACTGAGAAGGAGGAGGCTCAGTTTATGTTTGTTGTTTGCTCCAGGGTGAAACAAGATCCGTATGTTCTCAACTACATTTTAGAGATTAAAAAGGATAATCACTCCAAGAGGTCTATTTCTACCTCTGAGGATACAGAAAAAGGGAGAAGTGGAGAAACTGTGTCTTCCAATTACCTCACAGCTTCCAACCCTGCCTCCACCTCTAGTCCTCAACAGCACTCACCCACTGACTCTCCCTCAACTATTTTCCCAGCCAATGCAGGCCTCATCCATGTCTTGGTCCACTTGAGCAGAAGCCAGAAAAGCAGAGTTGCACTGAAAGCATTTGAGAGCTTGCTGCTCCTTGTCAGCATACCAAAGGAAGATACTGCTGTGTGCCTGGCTGAAAGCACCCCACTGTGTCAGCTACTAGCTGAGAGGTTGTGTGAGCTCTTCAGCCAGCTCCCGGCTACGCTGGAGCCTGCAGACATCCACAGTTTCCCCCAGACCCACTGGAATGTTGCGTTCTCTCAGAGCGGTAAGCAGGAAAGCCAGTCGTTTCCTGGTAGTGAGCACATGGAGAGCTTTTTCGCTTGGCTGGACTTccttgaccatctgatgagggaGGCACCAAagAGCCTCGCTGTGAAATTAGCCAAAGAAATTCACCATTGCTGGCTTGTCGGTGTTCTACAGCATGAGCTGCTCCAAATGTCTGAGATGGGCGTGCTGGTGAACACTGCGCTGCTGTGCTGCTCGGTGCGTCACATCCAATCCCCTGCCATGGTGGAAGAGCTGGTCTCGTTCCTCCTAGGCAGACAAACACAGAGCGAGCAGCGCTTCGACACAGAGAGTCATGTGCTGCGTTATCAACTTATAGAGCACTGTGACCACATCTCCGATGAGATCAGTATCACTACTCTGCTCCTGTTTGAAGCGCTTCTACAGAAGCCTCACAGGGACATTCTCTTCAACCTGGTCCTGAGGAACCTGGAGAACCGCTGCTACTTGACACGCACTCTGGGGGGAGGGGATGATTGCAGGCATTTCACTGACACTGATCCCGTGGAGGAGAACGAAGAACTAGAGGAGGACCCTTTCTTCACTGACATGTACGGCGAGGATGAATTCAACAGCTCAGAGCAGCTTCTGCATCGACCACAGCTCATCAGAGAACATCGCTGCAGTGGGCAAACTCAAGCATTGGACATtgtaaacagTTTTCTGTGTTTGGTCCCTCAGGAAGCAAAAACCTCTCAACATGTCCAAGGTGCCCGATATGAAACTTATGTCCATGATGCTCATGAGCAGTTTAAAGAGTGCACTGCATTCTCGCTCGATTGGGATTGGCCGGAGTCCCTCAAACCAACCGAGTTGTCTGTATCCAGTTCTGACTTTTTCGAAGGTCACTTCCTCAAAGTCCTGTTTGACAGAATAGGCCGGATCCTTGAGCAGcccTATGAGCTGAACCTCCAGGTGACATCTGTGTTGTCCAGGCTGGCCGTGTTCCCTCACCCCCACCTCCATGAGTACCTGCTGGACCCCTACATCATCCTGGCCCCTGGAGCCCGCTCCCTGTTCTCTGTGCTCATCAGGGTGATAGGAGAACTGATGCAGAGGATCGAGGTGATCCCAAACTTCACAGAGAAGCTTGTGCATGTCCGAAGGCAGCTGATGGGCCTGGATGGGGAGTCTGGAGTGGATCACATGCCCCTGCTTAAGGGAGTGATCATCCTGGAGGAGTTTTGTAAGGAGCTGGCAGCCATTGCCTTTGTCAAACTTCCTGCCAACAACACAAACTTGCAGAACACTGACACCTTGTGAATCCTTGAACGGAACACTCAGTCAGACGGACGACACCAGTCACAGCTGCTTACTTCTGTTGGTTGCACGAGTAAACAAAGCCATAGATGACCGGAGGTACAAGGGCATTTAATTGTTCTCCAAAGATGGAGAATAGCAAATGTGTAAGATTCATCTCCATTTTTAAGTTTATTGTAAATGCTGACATGTTTTGCTTTGAGTTTAGCTTATGTTATATAATGACTATCTTAAGCAAATTATCACACCTGGAAGTAATGTATGCAGTCGGTCAAATCAATGTAAAAGGTTGCGTTCCATCTCGTCTTTGTAACAGTTGCGTATATAAGATTGCTGTAGGCTATCCCTGGTTCCTGAGATATTGAAACATGTATTAGAATGAGGATTGAGCCGGTATTCATAGTGCTTATGTAGGATCATGTTCATTATGGACTAAACTGATCCTGGGTCAGCACTTTTAATGAAGCTTGATACATGATCATCTGGGCTGTGAGACTGGTTGGAACAACCTAAAACTGTGCGTCATCCAGTTTAACTATTGATACTTTCTGTTTGCATGGCGATGAGTCCATCCTGGAGGCAGAACAGAGCGGTTTCCGCTAGATGGGCCAGGTACAAAGTCTAAATAAATTAATaccaaaaagcaaatgttttAATACAAGGTTAGGTTTAAAAGACTTGTACTtcgtggctgtgccagctagcaACCACTCTGGAGTTGCTTCCAGAACAAGATTCACGACAAAAAACACTAACCTGTGCTTGCCTTTTCTCACGTTTTATTTCTGTGTTGAGGTGATGTCTGGTGTCTTATGTGGACCAGGGTCACAACACATCGGTCTTAATACATTGTTTTAAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586156 lncRNA upstream 91619 50196228 ~ 50208464 (+) True LOC110526093
TU586182 lncRNA upstream 198023 50101832 ~ 50102060 (+) True G516751
TU586179 lncRNA upstream 203634 50096208 ~ 50096449 (+) True G516748
TU586176 lncRNA upstream 207633 50092075 ~ 50092450 (+) True G516745
TU586175 lncRNA upstream 208498 50091167 ~ 50091585 (+) True G516744
TU586357 lncRNA downstream 71233 50384006 ~ 50385057 (+) True G516918
TU586372 lncRNA downstream 120959 50433732 ~ 50433997 (+) True G516933
TU586408 lncRNA downstream 160756 50473529 ~ 50506298 (+) True G516964
TU586449 lncRNA downstream 207066 50519839 ~ 50536407 (+) True G517000
TU586439 lncRNA downstream 377129 50689902 ~ 50699685 (+) True G516990
XM_036980386.1 mRNA upstream 713 50198342 ~ 50299370 (+) True si:dkey-220o5.5
XM_036980385.1 mRNA upstream 102953 50106795 ~ 50197130 (+) False LOC110526093
XM_021606711.2 mRNA upstream 102953 50106796 ~ 50197130 (+) False LOC110526093
XM_036980383.1 mRNA upstream 102953 50106796 ~ 50197130 (+) False LOC110526093
XM_036980384.1 mRNA upstream 112865 50106792 ~ 50187218 (+) False LOC110526093
XM_021606717.2 mRNA downstream 27262 50340035 ~ 50417982 (+) False adam9
XM_036980388.1 mRNA downstream 27274 50340047 ~ 50417982 (+) False adam9
XM_021606716.2 mRNA downstream 27281 50340054 ~ 50417982 (+) False adam9
XM_021606718.2 mRNA downstream 28154 50340927 ~ 50417982 (+) True adam9
XM_021606719.2 mRNA downstream 130743 50443516 ~ 50513889 (+) False ogdha
TU585910 other upstream 548334 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 912871 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 992943 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1053630 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1112760 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 407628 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 599055 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1965720 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2339167 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3613169 53925942 ~ 53955130 (+) True G521552

Expression Profile