RNA id: XM_036980388.1


Basic Information

Item Value
RNA id XM_036980388.1
length 5399
RNA type mRNA
GC content 0.47
exon number 22
gene id adam9
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50340035 ~ 50417982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTGAGATCAGCGTTATGGGTTATAAATGGGAGGGATATATGACTTACTGGCTGGCAGCTAGTGACGACCGCACTACAAAGTCTGACGCATCAACACGCATGCGCTGTTTTATCCATTCTATTCGGGTTTACTGGATATGACATTAGGACTCATTTGATCTAAAACGAAACTCGATTAAAAAAGATTAGTAAATCTGTATTATTGTTCACTATTATAGTCACTGATCATGCGATCCTGCTAGATCTATCGTCTGAAAAGAGCCAAAGCCAGCAGCAGTAAAGCAGTTGCTTGTTGGTGAGCTAGCAATAGTTGTTACGATATGGCAAGGTAATTGTCTAAAGGATTTTTACAGAATGTGGAGAAGGCACTTCGTAATTGCTTGGAAGGCAACGCCTGGATAAGAAGATCCCTACTTCAATATTTTGTTGACAATTAGATAAACATGGGTATGCCGTTATTGTCCCATCCGTGCTTTAAAGCAATTTGTGTCATCGCTTTACTCAATGGGCTTGGCGACTGCAGCGAGGGTGTCCTATATCATCAGTGCCATGGGAAAAGAGCACGTTGTTGTCCTGGAGAAGAATGAGCTACTGCTCCCCGAGGACTTCACTGTGTACACACATGCCAAGGATGGATCTCTAATAACCAACAGACCTCCAATGCAGGATCACTGTCACTATCGGGGCTATGTGGAGGGCGTGGAGGGATCATCTGTGGCCATGAGTATCTGCTTTGGACTAAGAGGGGTGCTCCGCATGGACAACTCCAGCTATGGGATTGAGCCGCTGGTGTCTTCCTCGGACTTCCAGCACCTAGTGTACCGGCTGGAGGACGTGGTGTCGGAGCCGCTGGTGTGTGGCACTCCACACACGGAACAACTAGCCCCATCTGAACAGGACCACTCAGAGCATCACacccactctgacacacacaaacagcctgTCAGCCACCTCCTCAGGAGAAAGCGGGCAGTGCTGCTCCAGCCACACTATGTAGAGCTGCTCCTGGTGGTGGATAATGAGAGGTTCACCTACATGCACAGGAATGAGACTGCAGTGCGAGACGAGATGATTCATCTTGCAAACTACGTTGACAGTATGTACATGGAGCTAAACATCCGTGTGGTGTTGGTGGGCCTGGACATCTGGACCAGCAGGAACCCCATCAGCATTGAGGGCAGCGCCGGGGAGGTGCTCAGCCGCTTTGTCcagtggagggagaaggagcTGGTGCCACGGCGACGCCACGACAGCGCCCAGCTTATTCTGAAGAAGAGCTTTGGGGGCACTGCTGGGATGGCCTTTGTCAGCACTGTCTGCTCGCGGAGTCACGGGGGAGGGATCAACGCATTCACCAACAACAACATCCCGTCCTTTGCGTCCATCGTGGCCCACGAGCTGGGCCACAACCTGGGCATGAACCACGACAACGAGCGTAACTGCCACTGCGGGGTCACCAGTTGTATTATGAACTCGGGCGCCACTGGCTCGCGGAACTTCAGCAGCTGCAGCGCCGATGACTTTGAGAAGATGATCCTGAACACGGGAGGAAGCTGCCTGCTTAACATCCCGCGTCCGGAAGAGGGCTACAGTGCCCCCTACTGTGGCAACAAACTGGTGGACATGGGAGAGGAGTGTGACTGTGGCTCAGACAAGGAATGTGAGAAGGACCCGTGCTGTGAAGCCAAGACCTGCAAGCTCAAGGGTAGAGCACAGTGTGCTTATGGAGAGTGCTGTAAAAATTGTCAGTATTTGCCAGGGGGCTCAGTGTGTAGAGGTAGCAATGATGAGTGCGACCTCTCGGAGTACTGCAACGGCTCATCTGCACTGTGTCCAAGCGACGTCTTCAAGCAGAATGGCCACCCCTGCAAAGTGGATAAGGCCTACTGCTACAATGGGAAGTGCCAGCACTACGATGGACAATGCCGGGCAATCTTTGGCCCAAAGGCAAAGGCTGCCCCAGAGGTGTGTTTCAAAGATGTCAACTCCAAGGGGGATCGTTTTGGAAACTGCGGCTACCAGAACAATGGCTACAAGAAGTGTGAGAGCAGGAATGCCATGTGTGGGAAGCTACAGTGTGAGAACGTCCAGTCAGTCACCGTCTTTGGCATAGAGCCCTCCATCATCCAGACGCCCATCGCCGGAATCAAGTGCTGGGGTGTTGACTTTCTGCTGGGTTCGGACGTTCCAGACCCTGGCATGGTGAACGAGGGGACCAAGTGTGGGGAGAACAAGGTCTGTTTGAATTACGACTGTCAGAGCGCCGATGTGCTCAACTACGACTGTGATATCCAGAAGAAATGCCACAGTCACGGGGTGTGTAACAGCAACAGGAACTGCCACTGTGAGAACGGCTGGGCACCGCCCTACTGCGAAGCTAAAGGTTACGGCGGCAGCGTGGACAGCGGCCCTACGTGGAACGACAAGGACACCGCCACAAGGGATGGGCTGCTGGTTTTCTTCTTTCTGGTACTGCCTCTGATGGCACTGGGCCTCTTCGTCTTCTTCAGGAGGAATGAGCTGCAGAGGCGCTTCTGCAGGAGGAAAAGATCCCAGGGCTACGAGGCCGACAGCAGACCTCAGGCCAACACTAGCCGAGGCCCTCCTCCGAGAGCCAACCCCAACACCATTGTCAAAGACAGACACCAAGCTCAGTTATTACCACCAGAGGAGGTTGTGCAGACGAGCAGGACCGTCTCTGTGCCGTCTTATGCTGTCAGACCACCTCCTCCCTACTCAAAACCAACACCTGCTACAACACAACTTGTGCCTCAAAGACCTGCGCCCCCACCCCCAGTCTAGCCCATGGAAACGCGGTCAGCCAAAATCTACACAGGAAATGCAGTCACTTGACATAAGAGGCACACCTGCAATACAGAGTTGTAAAACGAACCGGACCAGTTTCTGATCCACTCCAAGgtgtcttttttgttgttgttgcaagaAGCAGAGATGATGTTTGGCTACATAAGACCGCTGCTACCAATTGCATACACTTCACTTCACCTTGAGCAACTGTCATAGGAATGTCAAGATGATGACACACAAGCCCTTGATGATCATAGTGGGGAgtttgtgttggttaagtaaaACATTTTAATTAACATTTTAGACAAACCTGATGGTGCTGGTGGGAAGGTAATCCATGCGCCGGCTTAACTGATACTGCAGAAATGTACCTGGTTTGGATCATACTGCCTGCAGTTTACCCTCTCTTTGGTCCTACTGTATGATGATTTGTGTTCTTTATTCCCTGAAGACAGTTGACGACTCAGATGCTTTTATCAGATTCAGGCCACATGAGTTtaacataacttttttttttaattttcacTTGGTTAATGGTAATATGCAGCCTTTCATCACTTGATAACCCTCAGATATTTAAAGTTTTGCAGTATTACATCTTGTTTGAATTAGTTGTCTTATAAGTGTGTCCCATACAGTACAATAATGTTGCTCTTACAACCTTAATCTTATGTTGCTGTTAATTTAGCTTAAAAACCATGCTGGATATCAATCTTCATTTTTCACCTTTTGGAAATTAAGACAATATCGTGGACATATTGGATGATGAGCGAGATTATACCTGGACCTTTTGACTGATAAATGGTTTCTGCATTTGCTGACCCAATACAGATATTCATAGCCTGTCCCTTTGTTACCGTTCTtctattcaatacattttatAGGATACTTATATTTTCCAATTTAGCCATTACCCCCCAATGGATTGCCCAAATTTAGACCTTTATTAATAATTTGATTAATAAACCGGGTCTAAGGGCATTCCGTTGCGACAGCTTGTGAGATAATCCATGGTCCAATGAACGTACATGCTAGTAGCATGCGTGACGGCGTCCGAAATGACATCCATAATCGGTAGACGGGTATGATTCATAGGTTGCCGTTTGCATCGCCGAGCAGTGAAGAAACTATCAAATCGCATTTTTAGATGCTAACCCCCCTCCCCAAATCAAAATCTAATATGGATGCCAGTGTTTTGTTGTCGCTTTGTGCGTGCAAATTTCCTCAATTTCCCGCAGGGTGCCTATATTCCATGGCTGATTAGCTTGACAGACAGGTGTGAAACACAGCAAAATGAGAACACAATATAGAATCCAGAATTGGTTTTGATTTGAGGAGGTGGGAGGTAGCATCTAAAAGCTGAATTTAATAGTTTATTCACTTTTCTACGATGCAAACAGTGACCaatcactaggcaagtcagttaagaacaaattcttatttacaatgacggtctaccctggacaaaccctaacccggacaatgctgggccaattgtgcgctgccctatgggactcccaatcacggccgatttgcgatacagcctggaatcgaaccagggtctgtagtgacacctctcatactgagatgcagtggcttagaccactgcaccactcgggagccccaaaatgtacttagaccactgcgccactcgggagccccaaaatgtacttagaccactgcgccactcgggcgcCCCAAAATGTActtggaccgctgcgccacttgggagccccaaCAGGTACCGTCATTAGTGCATGACTTATCTCGCAAGCTGTCGCTATGGAATTCCTTTAGACCCAAGCTACACACATTTTTTGACTTATGAATtaatgatatatacccattgTTCGCTTAATTGTTTCAGctgctgattgccactttaatGTGTGTCCATTTTATTTGACTGGTTTTGTTGTATCCCTGATTTGTTTGAAAAAAATATGACATAAAATAAGTCAATATTTAAGGGCTATGTAACATTTCATGTGATCATGCCATGTATGCATTTTGAGAAACTATATCGAGGTCAATGGCCTATGCATTGAAAACTGGTGAACATTCTGAAATGTGTTTACTGTATATTCGGACATGATGATTTTCCAATGACGGGAAGGAGGCAGGTCAAGTGGCTTTAGAAGCATCCTGTCTCAGACATTTGAAAGACACTGCCTGCATAAACGTTACTGAGGCATCCTATAGCAATATGGCAATCCTCCCACCTCTTTAATGGTGCATACAACAGCCAACTTCCTTTGCCACAATAAAGACTGACTTCTTCAAGAACAAATGTCATCATGTGTCATGTGTAGGCTACATGCGGAAGTAGACATTTGAGGATCATGTACGTCTGTGGTTGACATTTCATGTTTTATGTTTGCAGAATGTGAAAATGGTTTGATTGGCCTGATAGAACTGCATTTCCTACATCTTCCAGGTTCTCTATATGATTATGATGATGTGATAACTGGCAATAGTGAAAATGTCTGACACTTTGTGATTCAAAGAAAGTCATGACTGCCTTGATTGGACTAATTGGTGGTGGTGATTTGTAAATGCATATGAAATAAAAAATCCACATACTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586156 lncRNA upstream 131583 50196228 ~ 50208464 (+) True LOC110526093
TU586182 lncRNA upstream 237987 50101832 ~ 50102060 (+) True G516751
TU586179 lncRNA upstream 243598 50096208 ~ 50096449 (+) True G516748
TU586176 lncRNA upstream 247597 50092075 ~ 50092450 (+) True G516745
TU586175 lncRNA upstream 248462 50091167 ~ 50091585 (+) True G516744
TU586372 lncRNA downstream 15750 50433732 ~ 50433997 (+) True G516933
TU586408 lncRNA downstream 55547 50473529 ~ 50506298 (+) True G516964
TU586449 lncRNA downstream 101857 50519839 ~ 50536407 (+) True G517000
TU586439 lncRNA downstream 271920 50689902 ~ 50699685 (+) True G516990
TU586530 lncRNA downstream 344348 50762330 ~ 50763117 (+) True G517068
XM_021606712.2 mRNA upstream 27274 50300082 ~ 50312773 (+) False fam160b2
XM_021606713.2 mRNA upstream 27274 50300083 ~ 50312773 (+) True fam160b2
XM_036980386.1 mRNA upstream 40677 50198342 ~ 50299370 (+) True si:dkey-220o5.5
XM_021606711.2 mRNA upstream 142917 50106796 ~ 50197130 (+) False LOC110526093
XM_021606719.2 mRNA downstream 25534 50443516 ~ 50513889 (+) False ogdha
XM_021606721.2 mRNA downstream 25534 50443516 ~ 50513889 (+) False ogdha
XM_021606722.2 mRNA downstream 25534 50443516 ~ 50513889 (+) True ogdha
XR_002473702.2 mRNA downstream 112080 50530062 ~ 50535333 (+) True LOC110525036
XM_036980389.1 mRNA downstream 123711 50541693 ~ 50630258 (+) False LOC110526111
TU585910 other upstream 588298 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 952835 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1032907 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1093594 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1152724 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 302419 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 493846 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1860511 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2233958 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3507960 53925942 ~ 53955130 (+) True G521552

Expression Profile