RNA id: XM_021606719.2


Basic Information

Item Value
RNA id XM_021606719.2
length 5074
RNA type mRNA
GC content 0.53
exon number 24
gene id ogdha
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50443516 ~ 50513889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAATTGCACAACTGTGGCCAATcctcattgtggctagcttcacattgGTGTCTCGACTCTCACACCGCAGTTGCTTTTGGTGTTGCTACTCGCTGTCATTTCCATTAAGACAGAGGGCAACGCGGCAGAACAGAGTTGGTTAGGAAACAAACACCGCTGACAAGCGAAAACCAAAGGCCCCCTGGAAAAAGTTTTCCTGTGGATCATTTGACTGCAGTTTGGTTGAAGTGAAAGgagtctccatccctctctgtgaTTGTTTTGGAGAGACAGGCGAGTTGTGTGCTAAAGGACTGCGATGCATCGCTTAAGGACTTGCGCTGCCCGGCTGCGGCCGCTGACAGCCTCTCAGACTGCTCAGAACTTTTCACAGCAGAGGCGTGTGGCCGTACCAAGGACTTTTCAGCCATTTAGGTGCTACACCGCGCCTGTGGCTGCCGAGCCTTTCCTCAATGGAACAAGCTCCAATTATGTGGAGGAGATGTACTATTCATGGCTAGAGGACCCCAAGAGTGTTCATAAGTCTTGGGACGTTTTCTTCCGCAATGCCAATGCAGGTGCTCCCCCGGGCATGGCCCACCAGAGCCCTCTGAGCCTTGCCGGTCTCCCTCAAGCCCAGTCTTTGGCAGGGGCTCAGCCCAACGTGGAGAAGCTGGTGGAGGATCACCTGGCTGTCCAATCCCTCATTCGTGCCTACCAGATCCGTGGGCACCATGTTGCTCAGCTGGACCCTCTGGGGATTATGGATGCCGATCTGGACTCTCACGTCCCCAATGACATTATAACGTCCTCGGATAAACTCGACCTGGCATTGTTCAAGGACCGTCTCAGTATTCTAACTGTCGGAGGCTTTTATGGACTGGACGAGTCGGATTTGGACAAAGTGTTCCGCCTGCCTACCACCACCTTTATCGGGGGCACTGAGACCGCCTTGCCCTTGAGGGAGATAATCCGCCGCCTGGAGATGGCCTACTGCCAGCACATCGGGGTTGAGTTCATGTTCATCAATGACCTAGACCAGTGCCAGTGGATCCGGGAAAAGTTTGAGAAGCCCGGCGTCATGCAGTTCACCCTGGAGGAGAAGAGGACCCTGCTGGCCCGCATGGTTCGCTCCACCAGGTTCGAGGAGTTCCTCCAGAGGAAGTGGTCGTCAGAGAAGCGCTTCGGCCTGGAGGGCTGCGAGTCTCTGATCCCCGCCCTCAAGACCATCATCGACAAGTCCAGCGAGAAGGGTGTGGAGAACGTCGTCATGGGCATGCCACACAGGGGTCGTCTGAACGTGCTGGCCAACGTCATCCGCAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCTAAGCTGGAGGCTGCTGATGAGGGCTCTGGTGATGTCAAGTACCACCTGGGGATGTACCACAGAAGGATCAACCGTGTGACCGACCGCAACATCACTCTGTCCCTCATGGCCAACCCCTCCCACCTGGAGGCTGTGGACCCCGTGGTGCAGGGCAAGACCAAGGCCGAGCAGTTCTACTGCGGAGACACCGAGGGACACAAGGTGATGTCCATCCTGATGCACGGTGATGCTGCCTTTGCCGGTCAGGGCGTTGTGTACGAAACCTTCCATCTCAGCGACCTGCCGTCCTACTCCACCCACGGCACGGTGCATGTGGTCGTCAACAACCagATTGGCTTCACCACTGACCCCCGTATGGCGCGCTCCTCTCCGTACCCCACTGACGTGGCCCGGGTGGTCAATGCTCCCATCTTCCACGTGAATGCTGACGACCCTGAGGCTGTGGTGTACGTGTGCAACGTGGCCGCCGAGTGGAGAGCCACCTTCCACAAGGACGTGGTGGTGGACCTGGTGTGCTACCGGCGGTTGGGACACAACGAGATGGACGAGCCCATGTTCACTCAGCCCCTGATGTACAAGCAGATCAAGAAGCAGAAGGGAGTGATGCAGAAGTATGGCGAGAAACTCATTGCAGAGGGGGTCGTCACGAGACAGGAGTACGAGgagGAGATTGCAAAGTATGATAAGATCTGTGAGGAGGCACATGTTCGCTCCAAGGATGAGAAGATCCTCCACATCAAACACTGGCTGGACTCTCCCTGGCCTGgtttttTCAACCTGGATGGCCAGCCCAAGAGCCTGACCTGCCCGTCCACTGGCCTAACTGAGGAGGAGCTGACCCACATCGGTCAGGTGGCCTCCTCAGTGCCAGTCGAAGACTTCACCATCCATGGAGGTCTGAGCCGTATCCTGAAGGCCCGAGGGGAGATGATCAAGAACCGCACGGTGGACTGGGCCCTGGGAGAATACATGGCCTTTGGCTCTCTGCTCAAAGAGGGCATCCACGTTCGCCTCAGCGGCCAGGACGTGGAGAGGGGCACCTTCAGTCACCGACACCATGTGCTGCACGACCAGAACGTGGACAAGAGAGTTTGCATCCCCATGAACCACGTGGCCCCCAACCAGGCCCCCTACACCGTCTGCAACAGCTCCCTGTCTGAGTACGGCGTGCTGGGTTTCGAGCTGGGCTTTGCCATGGCCAGTCCCAATGCCCTGGTCCTGTGGGAGGCCCAGTTCGGAGACTTCCACAACACAGCCCAGTGCATAATCGACCAGTTCATTTGCCCCGGCCAGGCCAAGTGGGTCCGCCAGAATGGCATAGTCCTGCTGCTGCCCCACGGCATGGAGGGCATGGGCCCAGAACACTCCTCTGCTCGTCCAGAGAGATTTCTCCAGATGTGCAACGATGATCCTGACGTGCTCCCGAGCATCACAGAAGACTTTGCCATTCGCCAGCTCCACGACTGCAACTGGATAGTGGTCAACTGTTCGAACCCTGGCAACTTCTTCCACGTGCTGAGGAGGCAGATTCTGGCGCCCTTCAGGAAGCCTCTCATCGTTTTCACCCCCAAATCCCTGCTGCGCCATCCCGAGGCGAGGTCCAACTTTGACGAGATGCTGCCAGGCACAGACTTCCAGCGCCTGATCCCAGATAATGGCCCAGTGGCCCAGAACCCAGCCGGGGTGAAGCGCATCGTTTTCTGCACAGGGAAGGTGTACTACGAACTCACCAAGGAACGCAAGGCCCACGGCATGGAGGACACGGTCGCCATTGCTCGCATGGAGCAGCTGTCCCCCTTCCCCTTCGACCTGGTGAAGGCTGAGAGCGAGAAGTACCCCAATGCCGACCTGGTGTGGTGCCAAGAGGAGCATAAGAACCAGGGCTACTACGACTACGTCAAACCCCGCATGCGCACCACCATCGATCGCGCCAAGCCAGTCTGGTATGCTGGTCGCCCTCCTGCTGCGGCCCCAGCCACAGGAAACAAGAAGGCCCACCTGGTGGAGCTGAAGAATTTCCTGGACACTGCCTTCGATCTGGACGCCTTCAAGGACCAGATGTAACTCTTTCTTCCCGCTTCCTCTGTCCCAGGATAAGGGGTAGCCTTCAACCTCCACTGCAACCCAGAGGCCCCTCCTTCTCCGTCCCATACGCCCACATACCCCCTGGACTTGGAGCTTAGAGCAAGCCTACTCTCCTGGtgggtgtctctgtctctagcccACAAAGGCAACAGTCCTGTTCATTTAAGTCATTGCTATCTTCCCCTACCCAGGCCCTCCCTCATCGACTCCCCCTGGTCCTGTCTCAGCGTGCCCTACCCCACCTTCATCAGACACATGCCTCAAGACCACACATTTAGCAGTagacaaccagccagccagccagtcaggggTCAGGAAAGAGAACCTTTGTACAGTCAGTGATCCTTAGCTTGGTTTTTATTTTCTATACCTGTATTTCTCTGGTTAACACTCCACTCACCAACACTATAACCTTCTTGTGTTGGGTTTTGCTTaagccctctgtgtgtgtgtgtaaccaaaGCACATTGTTTATAAAGCTTTATATATTTTTCTGTGCGTTTCATTCTGTTGCTATCCTTTTGAAAAGTGTCTCCTTACACGTTTCATCGCAGGTCTCCTTACATAGCCAAAGGACGGGGCAACTGTTGCAACCAGTTTAAGATATGTACTGCTAGTATTTGGCAAAACACACAACGGTTAGTTCAATGTCCATGATCAGACCACATCATTTCGAGGAGAACCaggtgttcccccccccccccctcctgttctCTGCTCTGAGCACACTGCAGGGATGAACTTGTCTTGGTCTCTACCCCTCCGTCTCTCTTCTCCAGGGCTATCTATCTCCTTGGTGAGTGCTATTGACATCACCACCATCTGCAACTGCTTTACATTTGTCTGTTTATTGGTTGTATGTGTGTTTAGGTTTTTTTGCCTTTCAAATCAACTTTCTCATTCTTGTAATGGCTATTAGAATATGAGGTATTGAATGTGGGAAATGGGAAATATTTTCACTGTCACATTGTCTTCAGTGAAATACTAGTACATTTAACATGACAAATGCTCTTTTATCCATCTTGCACCATTTCTCACGAAAGAGGCTGAGACTTAGGTAAGGGAAATTGGAGTGATGAACCAGTGAGATGAGTTGGTACCATATTTGCATTTATATATGAGTGTTGAACTGGTCAAATGAGTTCCATGTTTGCACTTGTATATAAATCCACATAGGAGAAGTTTGTAAAGGATTGTTCATATAGCAATGTCAGGGCAACTTCTGTCTTTAGATACATGGCCCCTAGCTCTGTTGTCCTACTGCAGAACAGGGCAAGCAGGTTGGAGCTGATTTCCCTCCCCCCTACATGTAGTCCTCTCATGACTCTAGCTAAACACTGATCTCATCCAGATGACATAAACTAGACCTGGCACCTCTAGATGTCTCTCAACAACTCATGTACTCATTTTCCTCTTGCAACCCCTGTGCCAAATTTGTTTTCAAGCATTTAACATTATTTTGAGGGTGTATGAATGAATTGCCAGAGGAGTCTTTTTAGCTGCATAGCTAATTAAAAAAACAGGACATCACCTTTTGTTTGGATGGCTCCACGAGAAagcaaattatttatttattttcatatagTGGATTAAGATTCTTTCCATTTAATTATTTTTGCTTCATTCAATAAAGACTATCTTCCCAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586372 lncRNA upstream 9519 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 58459 50384006 ~ 50385057 (+) True G516918
TU586156 lncRNA upstream 235052 50196228 ~ 50208464 (+) True LOC110526093
TU586182 lncRNA upstream 341456 50101832 ~ 50102060 (+) True G516751
TU586179 lncRNA upstream 347067 50096208 ~ 50096449 (+) True G516748
TU586449 lncRNA downstream 5950 50519839 ~ 50536407 (+) True G517000
TU586439 lncRNA downstream 176013 50689902 ~ 50699685 (+) True G516990
TU586530 lncRNA downstream 248441 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 249827 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 258635 50772524 ~ 50773077 (+) True G517101
XM_021606717.2 mRNA upstream 25534 50340035 ~ 50417982 (+) False adam9
XM_036980388.1 mRNA upstream 25534 50340047 ~ 50417982 (+) False adam9
XM_021606716.2 mRNA upstream 25534 50340054 ~ 50417982 (+) False adam9
XM_021606718.2 mRNA upstream 25534 50340927 ~ 50417982 (+) True adam9
XM_021606712.2 mRNA upstream 130743 50300082 ~ 50312773 (+) False fam160b2
XR_002473702.2 mRNA downstream 16173 50530062 ~ 50535333 (+) True LOC110525036
XM_036980389.1 mRNA downstream 27804 50541693 ~ 50630258 (+) False LOC110526111
XM_021606739.2 mRNA downstream 34620 50548509 ~ 50630258 (+) False LOC110526111
XM_036980390.1 mRNA downstream 60759 50574648 ~ 50630258 (+) True LOC110526111
XR_005052155.1 mRNA downstream 150117 50664006 ~ 50670797 (+) True LOC118964908
TU585910 other upstream 691767 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1056304 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1136376 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1197063 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1256193 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 206512 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 397939 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1764604 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2138051 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3412053 53925942 ~ 53955130 (+) True G521552

Expression Profile