RNA id: XR_002473702.2


Basic Information

Item Value
RNA id XR_002473702.2
length 2837
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110525036
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50530062 ~ 50535333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCCAATATTATAAAAATGTTAATTGGCCACAATTGGTGACAGTTACTATAATGTAAAAGTGTTTTTGGAATGAGAGGGGTGGGCTGTGTCACAATACATTAAGTACCCTAAACACAGTGTATTATTCTTACAGCCAGTTCCAGTTACTGGGCTTCTCGGACTTGGAGAGGAGCTAGAGGTGCACCTTGTTATGCCATCACTCAAGAGCAACTGAGGTTTCTGATGTCCTGTGCTTTCAGTGTGTCTCAGATGGCAGATATTCTACATGTGTCCTGATCGACAGTCAAACGTTGTCTAAGACACTTCAATCTGTCACATGCACCATTATATTCTGACATGTCAGACTTGGCTCTGGATGAAAAGATTAAGGACTGGTGGCTGGGAACGACAAACGTGGAGCGGAGGCTGTTCGATCACAATTAAGAGCTCTAGGTGCAGAGTCGCAGAGTGAGGGACAGCATGCTCCGTGTTAACCCGAGGGTGGCTGCCCTTAGAGCCATGTCGCAGAGGCTGCATAGAAGGTCATACCGTGTTGCTGTACCAAACTCGTTATGGCACCTTGATGGAAACCACAAACTAATAAGGTGGAGGATAGTCATACATGGTGGCATTGATGGGTACAGCCGTCTCGTTGTTTCTCCGTGCCTTCAGCAACAATCGCAGCAGTAGAGTAATGGATTGCTTCATGAATGCTGTCTCCAGATATGGCGTTCCCTCCAGAGTTAGGACGGACCATAGAGGAGAAAACAACACTGTCTGCTTGTTGAATGTAATACAtagggaaaatatatatatattttttaaatagagCTACATGCATCCTTAAAATGTCTTCTTGACCTACACATTGATTACATTCTATAGTGAAGGATGCATGCGGCTACATTTTCTGTAAATCATTTTTAGAACGCAATCACATTATGTTTGACAGCTTTATTGCTTTCTACATGTTTTTGAAATGTATAAGCCTTTAAATGACATTTAACAGACTACTTCTACAAACAAGGCTACACTTGTGGCAGCACCTATTCCTGTGCCCCCCCCCATCGTCTGCACCACTTCTTGTGGCCCCCTCCACCTAAACCACTTCCTGTGGCCTCCCCTCCACCATTCCCTGAGGCTTATTGTCCACCTTCACCACACTCTTCTGTTGATGTTGAGGACAATGAGTAAGTCCTCCCTGTAAATAATTAAATGTCTTGTTATTACAGATGAAATGTGGGAAGTATCTGAGCTTTGCTATTCTGAATGTCTTTTTTTGTTGTGTTGACCTCCAAACACTGCTGAAGTTAATGAGATGCCAACCAAGTTAACGTGATGATTGACAACATTTATGATTGTGCCATGAGAGGCTTTAAGAGAGCCCGCTTTAGTCCAGAGGCAAAAATAGACATGGTTTTTAGGGATGCTGACAGAAAAGGGGCAGCTGAGGGTGGTCCCTCAAGACAGGGTGATCCTCTCCTGCTGCTAATGAGTGCCATCCATTCCTCTGCAATATTTGAGGGACCTGATTAGCAAAAATGCCTTTTTTTGTAACTCTCAAGGTGAGTTACACTTTAACACCAACAAAGACACATTTGTTTATGGCAATATATATGACTTGAGTAAGACATTTGATTTTTGTATTTAATGTGTCCTTTATTTGCTGTTTGTCTTCTGTGTGATAGCACTCTATGATGGTGTATACAAGCAGGTGGGCCGCTTGATTGCTGTCTGTCTGGTACATGGGGGTGTAGAGTCACATTTTTTTTTCAGAGGCTATACAGGCAAGTGTgtggccaacaacctcctgtgCCAGAACTGAAAGAAATTGCGGAATATGACTTCAGAGAGAAGTTGGAGAAGGTAAGTAGTTTATACTGTGAATGTTATTTATGTTACTGTTAATTTGCACtaagtttgaaaaaaaaaatggtattggTTCATGAATACCTTTCCACATGGATTTGGTTTCCTTTTGTTGGCAGTCAATCTTTTTTAAGGGTAGTGATAATCAGTTTATTGTTTTGCTAATTTGTCCCAAAACACAGATCAATAAACAATCTAAAATCCAGTTAGCATAAACTGTTGATGAGGCAACGGAAGCGGTCATGTTGGATCCAGTGCAATACATTCGTACATTGGAGAGGGATGCCCTGGTGGAGTCAACCACAAAGTTTTACATAGAAAGTAGGATACGGGATGCTCTTGAGCAGTGAGTTTCCATATGTCTAATTAATCTCAAGTTTAGTTAAATACTTCAGGGCAAATTCATTGACTTTTTTTTACTTTATAGATTCAAAGAGGGTCTGATGTGTCTAGGTCTCCTGCCTTAAATGAATAGACACTCAAGCCTCTTCATCTACGCTGAGAAACCTCTTTTGGCCAAAGACATAGCTTCTCTCTTCAAAGCAGAGCGCTCCCCACCTGGCACCAGTCAAAGAGCAATAGAGAAACAAGTCAAATGTTTCTGGAAGGACTGGCTTCTGGAGGTGGAAGGTTAGATGCAAAACCATGATCATTGAAGTAACACGGCCCACATCAATAAAATATCACCTCATCACGCATTTTATAGCCTTATTCTTCCATGGGCCCCCTAAGAATTTAATAGATCAATTAAATCCCAAACTACTTTCACTTAGAGTATTGTGTTCTCCAATAAGTGTTACTTATGAACCTTAATGTCCCCCCCCTTCCCTTTTTTCAGGGGGGAACACATACCCTTTAACCATGGGGAAGGTTTTCATTTTCACTTGGTGGGCTTCAGCATTCCTAGGCTGGTATTGCCAGTGGAGCCACAGCtacagttctctctgctactgcacggcaatcATTACcgtagcgccaagtctagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586408 lncRNA upstream 23764 50473529 ~ 50506298 (+) True G516964
TU586372 lncRNA upstream 96065 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 145005 50384006 ~ 50385057 (+) True G516918
TU586156 lncRNA upstream 321598 50196228 ~ 50208464 (+) True LOC110526093
TU586182 lncRNA upstream 428002 50101832 ~ 50102060 (+) True G516751
TU586439 lncRNA downstream 154569 50689902 ~ 50699685 (+) True G516990
TU586530 lncRNA downstream 226997 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 228383 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 237191 50772524 ~ 50773077 (+) True G517101
TU586573 lncRNA downstream 238013 50773346 ~ 50773606 (+) True G517102
XM_021606719.2 mRNA upstream 16173 50443516 ~ 50513889 (+) False ogdha
XM_021606721.2 mRNA upstream 16173 50443516 ~ 50513889 (+) False ogdha
XM_021606722.2 mRNA upstream 16173 50443516 ~ 50513889 (+) True ogdha
XM_021606717.2 mRNA upstream 112080 50340035 ~ 50417982 (+) False adam9
XM_036980388.1 mRNA upstream 112080 50340047 ~ 50417982 (+) False adam9
XM_036980389.1 mRNA downstream 6360 50541693 ~ 50630258 (+) False LOC110526111
XM_021606739.2 mRNA downstream 13176 50548509 ~ 50630258 (+) False LOC110526111
XM_036980390.1 mRNA downstream 39315 50574648 ~ 50630258 (+) True LOC110526111
XR_005052155.1 mRNA downstream 128673 50664006 ~ 50670797 (+) True LOC118964908
XR_005052154.1 mRNA downstream 176053 50711386 ~ 50719146 (+) True LOC110526117
TU585910 other upstream 778313 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1142850 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1222922 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1283609 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1342739 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 185068 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 376495 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1743160 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2116607 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3390609 53925942 ~ 53955130 (+) True G521552

Expression Profile