RNA id: XM_021606739.2


Basic Information

Item Value
RNA id XM_021606739.2
length 4138
RNA type mRNA
GC content 0.54
exon number 19
gene id LOC110526111
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50541693 ~ 50630258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGCATAAATTACACCAGCCCATTGTGCAACAGAAGGAAgcagcttgttagctagctagctggctgaaCTGTGGTGGCTAGAATTCGCACTGTAACGTTAGTGGAGAACAGAGCCAAGGAAAGTGCAGCCCTTCAATACAGCAGGCAAGCAGACCAGGCTGCCCTCAGTTATCAGGCCAGTTAGCGACATTATTGAGAGGGTAGGGCAGGGTTATCCATCAAAGCAGAACGCTTGGGTGACGGACAACGCTACACTGTTTTGAAATTAATTGAATTAAAGCTGTACTTTATTGAAATAGCACTGATGGTGCCGAGCGCTGGAGAAGggtagctagttaacgttagctggttAAGTAACGTTAGCCTAAACAAGTTTCCTAGGTAGACGAGCCTGGACAACCTTTCGACatttaacgttagttagctacagtagcaaCTTGTCCTAAAAGCTAACGTTAGATAGCTGGCTACGTTATTTTGTCAGTACAATTTATCTTAATGAAACCGAGTCCCAATCATCCAGAAAACGGGTTTGCGCATTACTGCCGCGGAGCTCAGACTGCAGCCACGCAGACCAACCCCGGCCAGTTGAAGTTGCAAGGCTGTCTGCTGGTTGAGGAGTTGTGGGGCTCCCTGCTGATCCCAACGTCCTTCCGATGAACCCCATGAACTCCATGAAACCTGGCCTGCCTCCTAATCCACACAGTGACGGCTCCTACCCTTATGACCCTGTGTCCTGGCAGCAAGGCAGCAATCAGCCGGCAGGCTCCCTGTCTGTGGTAACCACAGTGTGGGGGGTAACCAATCCTTCACCCAGCCAGGTCCTGGGTGGGAACCCGATGGGTCCAGGTGGGAACTCTGGCGGGGGCAACATGATGCCCGGCCACAGCCCTGGGATGGGACAGCAGTTTATGGGTCAACAGGGCTACCCGGAGCCCAACAAAGGCTACATGCAGCAGGGCATGTACGGCAGGGGCAATGGGGGATACCCCACCGGGCCTGGGTACGTGGGCAGTTACCCCAATAACGGAGGGGGGTCTATGGGCATGCCCCCTCACGGCATCCGCCCTCAAACCGACTTCACCCAGGCGGCGGCGGCGGCGGTGGCTGCAGCGGCTGCCACAGCAACAGCCACAGCCACGGCAACGGTTGCTGCTATCCAGGAGAAGCAGAACCAGGAGATGAACTACGGCCAGATGGGTGGCGGTGCGGGCTACAACACACAGTTCATGCAACACCCGGGCCCCCGAGGTCCCCCTGGCATGTCCCCGGCAGGGATGGGTCCCGCTCGTCCCCCGTCCATGGGGCCCATGTACGGTGCCCCTCAAGGTCAGAGGATGCCCCAGCACCCAGGCTACCCCGGGGCTCAGCATGGACCACCCAGGCCACAGCAGGGACTCAAACGCCCATACAATGCTGAGGGCTTTACCGGACAGCAGTATGGTCCAGGCATGGCCGGCCCTGCTCCTGGTCAGGGGCCCTACCCTGGGCAGCCCATGCAGTACCATGGGGGCCTGGGACCCCAGCGCTCAGCCACCTCCCCGTCCTACCAAGGCCACAAGATGCCCATGCAGCAGGGCAACATGGGCCAGTACCCCTCGGGACCAGCTCACCCAGGACAGTACTACAAGTCGGAGCAGTTCAATGGACAGGGCAACACACTAAATGCACTAGTGGCCGGGGGAGTCGGTGGAGTTTACAACACCTTCAACCAGACTGTAGTCAATGGGCCGGGCAGGGTGATGCCTGGTTATCCAAGCTCTCCCCTTCTTGGAAACcccacccctcccataaccccAGGCAGTGCGGTGCCCCCCTACATGTCTCCTGGCCATGATGTCAAGCCCTCTTTCCTGCCTGACATCAAGCCAAACACGAACTCCCTACCCCCACCACTCCCCACAGGTAACCCCAGCGATGACCTGCGGTTGACCTTCCCCGTACGAGATGGCGTGGTGCTGGAACCCTTCCGCCTGGAGCACAACCTGGCCGTCAGCAACCACGTCTTCCAGCTGCGCGACTCCGTCTACAAGACCCTCATGATGAGGCCGGACTTGGAGCTCCAGTTTAAGTGTTACCACCATGAGGACCGTCAGATGAACACCAACTGGCCGGCGTCGGTGCAGGTGAGCGTTAACGCCACGCCCCTCACCATCCAGCGTGGCGACAACAAGACTTCCCACAAGCCCCTGTACCTGAAGCAAGTGTGTCAGCCCGGGAGGAACACCATCCAGATCACGGTCACAGCCTGTTGTTGTTCTCACCTGTTTGTGCTCCAGCTGGTCCACAGGCCGTCAGTACGCTCGGTGCTGCAGGGCTTGATGAAGAAACGGCTTTTGCCAGCAGAGCACTGTGTCACTAAGATCAAGAGGAACTTCAGCAGCGGCACCATCCCAGGGACACCGGGGCTGAATGGGGAGGACGGGGTGGAGCAGACTGCTATCAGGGTGTCCCTCAAGTGCCCCATCACCTTCCGCCGTATCCAGCTGCCAGCGCGAGGCCATGACTGCAGACACATACAGTGTTTCGACCTAGAGTCCTACCTGCAGCTGAACTGTGAGAGGGGGACCTGGCGCTGTCCTGTGTGCAATAAGACTGCTCTACTGGAGGGTCTAGAGGTGGACCAGTACATGCTGGGGATCCTCATCTACATTCAGAACTCGGAGTATGAGGAGATTACCATTGACCCGGTGTGCAGCTGGAAGCCCGTTCCCATCAAACCCGACCTTCACATCAAAGAAGAGCCGGATGGTCCGGCACTGAAGCGCTGCCGCACCCTGAGCCCCAGTCACATGATCCTGCCCAGTGTCATGGAGATGATCGCCTCCCTGGGCCCAGCCTCATCGCCCTACCCCTCCATGCCAGCAGGGGGAAACGGCAGTACTCCGGACTACCCCAGCCAAGGATTGGGATACCCTAACCAGCCTGGGTTCTCAGACTTCCCAAATGCCCCTGGCACCCCTAATGTTGGGGAGTTCTCCTCGGGACCACCCCCCCTCTCCTACCAGGCTGACCTGCCAAGTGGACTCCTCACTTCAGACAAACCCATGGGACATCCCATGTCATCCCAGATTCCCCATTCTGGCCGTATGGACTCCTCCCACAGTTCTCTCCAGCATCAGCAGCATCAAGGCCTCCATAGCATCTCACACCTCGGGGGACCAGGGGCACCCATGATGCAGCCTCGCAATCCCTCCCAAAACACCAGACTACACACAGAAAGCTCCTTTGGGTTAGGGGGCCCCGCTTGCTCAGAGGTGCCAGAGCCTTCCTTGGATttacttcctgaattgacaaaTCCAGATGAGCTACTGTCTTACCTTGGTCCCCCCGATTTACCGAACAACAGCAATGATGACCTACTCTCCCTCTTTGAGAACAACTGAGTCCCGGTTCTCCTCTCCAGTCTCCCATGGTTCCCTGCAACACATAAACTACATACAAGAAGTATCCCACCTACAATGTGGGTATAAAAAATACTTCCTGTAATATAAGAGCTCCCCTTGAGCCGAAAATGGCCGTCAGTGGTAGTAGGCGTGTCGAGGAGACACTTGAATATGAGGAAAAACTTTGATGTCCCTTGTCTGACTATAAACTATGGTAATATTTTGTTTTATATCTGTAAACTATTCCCGCATCCATTCCCTTGTTACTACCTTTCTTGCCCAAGGATCCAATTGTATTTAAATGCTTCCTTACTAGAATCACATTTAGAAGGGATTATCAATGTATGTACATTTTCTTATTCAATGCAGTTGTGATGCAAGTTTATGTCCAACTGAATTTGGTGAGTTTGAAATGTCCATAAAAGTATGATTAAATAACCTTTTTTAATTTACAATAATAAATGGAAGATGAATACATTGAGGGGATGCCCTATGTGTTTCAAAGATGAATATGTATTTTCACTGCCTTTTACTGTGATTTATCAATGCACAACAGTGACAAAACAGCAATGTAATTTCCACATTTACATAACCATTCCAAGCTATGATCATTTAGCACCCCGGCACACAAACAATTACTCAGTCTTTTTATATTCTAAATTAACAGATTTTTATGCATAAATGTTTGACATTATATTCATTACAATGGTTAACAACCTTGTAGGCAAATTGAATAAATGGCAATCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586449 lncRNA upstream 12102 50519839 ~ 50536407 (+) True G517000
TU586408 lncRNA upstream 42211 50473529 ~ 50506298 (+) True G516964
TU586372 lncRNA upstream 114512 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 163452 50384006 ~ 50385057 (+) True G516918
TU586156 lncRNA upstream 340045 50196228 ~ 50208464 (+) True LOC110526093
TU586439 lncRNA downstream 59644 50689902 ~ 50699685 (+) True G516990
TU586530 lncRNA downstream 132072 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 133458 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 142266 50772524 ~ 50773077 (+) True G517101
TU586573 lncRNA downstream 143088 50773346 ~ 50773606 (+) True G517102
XR_002473702.2 mRNA upstream 13176 50530062 ~ 50535333 (+) True LOC110525036
XM_021606719.2 mRNA upstream 34620 50443516 ~ 50513889 (+) False ogdha
XM_021606721.2 mRNA upstream 34620 50443516 ~ 50513889 (+) False ogdha
XM_021606722.2 mRNA upstream 34620 50443516 ~ 50513889 (+) True ogdha
XM_021606718.2 mRNA upstream 130527 50340927 ~ 50417982 (+) True adam9
XR_005052155.1 mRNA downstream 33748 50664006 ~ 50670797 (+) True LOC118964908
XR_005052154.1 mRNA downstream 81128 50711386 ~ 50719146 (+) True LOC110526117
XM_036980393.1 mRNA downstream 88950 50719208 ~ 50734901 (+) False LOC118964907
XM_036980394.1 mRNA downstream 89029 50719287 ~ 50743120 (+) False LOC118964907
XM_036980397.1 mRNA downstream 117023 50747281 ~ 50759879 (+) False LOC110526112
TU585910 other upstream 796760 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1161297 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1241369 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1302056 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1361186 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 90143 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 281570 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1648235 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2021682 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3295684 53925942 ~ 53955130 (+) True G521552

Expression Profile