RNA id: XR_005052154.1


Basic Information

Item Value
RNA id XR_005052154.1
length 4532
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110526117
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50711386 ~ 50719146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtgtttcctctgacacattggtgtggctggcttctgggttaagcaagcagtgtgtcaagaagcagtgcaacTTTGCAGGGTCATGCTTGgggggatgcatggctctcgacctttgcctctcccaagtccgtactggagttgcagagatgggacaagactaactaccaattggacatCACTAAAAAGTAAACAAAAAATGTTGGACTCTAGGGATGCTCGATACTTTTCTATAGGCCTAATTAAAATTGATGAAGGGTGAGGCTAATCAATCGTATAAATGTTCATTTTAGTTTGTTCTGTAATCATTAAAGCACTCCAAATAATGAATGGAATATGACTCAAACCTGAATTGTAATGTTACCCATTGCTTTGTTCCCACCAGTTATGCATGGTAACCAAAGGATATATGATGCGTCATAATAATGCCTGAAGGTAAGAGTAAGCTATATGCAAACCTGATGTTCAGAAATGATCAACTTAATGCATATTCACCTCTATTACTGGAAAGTATTGTGATTTTCATAGCAGATTGGTGTAACGTAATATGCTGGGAGTCAGGggcaggtgcagaaggtgagtttaataatgaaTCGAAGCAGATTGACAAAATGTGAGAAGCGTACAGAACGTGAGAGAAAACAATACTACCTAGTAACTGCTGTcaactgagggctaaataaagggtGAGTAATCAAGGAGATAATGatgaccaggtgtgcgtaatgattgtTGCCAGGGCCGGTGGTTAGCAGACCGGCGACGCCAAGcgctggagagagggagcggaCACTTGTTGTTGACTAGCATGTTCTGTAAGGAGAAAGGACGGAGCTGTGCGATCAAACGTATGTTTGAAATATGGACCAGTCCTTATTTACAGTTGAGCACCACAGCAGGCAAGCAGGCTACACTTGACCTTGATcagaacagaacacagcaggCAGGGCTCTGAGAGGGCCCTGGAGGAAGTCTAATCCTATTGCTGAGAGACAAAAACACCATCCTCAGAGCCAAATGTCTCTCCAGAAATACCATGCCTGACCATCCAGGCAGCAGCCACCAGCTCACTCCATTAGCTACCACAATTAAAGTAGCCCTGGCTGGGCATCCCAGCTTATTAAATTGAAACGGATGGTGCATTAGTGGTAGCTGCAGGTCAGGGAAAGGTAACATTAGAGgtaatacacacagagagatgagacCCCTTCAGATCAGTTACTATTGCAGTTTTATATTTTGAGATGAAAAGAGTAAACCTGATGTACACTGTCATGACTGGCCTGTTCGGGTCAGGTTACCGTAGACCATAATCCTACAGCGATATCTCTCACACCCACCagcgggagagagatagagagttatGGAGGTGGGGGGTTTCATTACACCTCCCACCCATTGTAAATCTTAAGGCAGCAGACAAAATCCCCTTTGTCCTCTCAGTATGGAGGGATGGAATGTATGATGGGCCTATGGAGAATCTACCTCTGAACAGTAACATGTAATAAATGGACTTTGGGACAATATGTTTCGTGgcaatagatggaatatgaaatgATATGAGTGTCAtttttgttatgttattaaaAGTTAAATGACGACGTTATAACGAAAACATTATAACTTGAAGAGTTTTCACACTCATGTACTTGAGGTTTGCATActgtacgttgtgtggaaaatgtccagatCAAAGAGAATGTATTTGTAAAGATgtaatgtgaagttagttgtctaaattgGATCTGAGTAAAATCCAGACCTTGCATCGTAGCTAGTTACGACCAGAGAACTTGCCCTAAAGGTGGAAACGCCAATTTCTGACCCGAGGGTATAAAACACATGAGTTCAGAGCTAATATAGCAGACTAAGCAACCACGAGCTCCAGCCAATGTCCGAATTAGTTGCATACCTAAAATTCAACACAAGGTTGAAGAAGACAAAGGAACCTGAAGAGGGTTAAACCAAGGCCTCATACCTTTTAAAGGGTTAATATATTGTGCTATgataaactctgtgtgtgtgtgtgttaaaacctGTTTCGAGTGTTGTGCCCTTCAGACACTATCAGAAGACTGAAACCGCCTACAGTACGTTCATACTCCTCCTGTCTGGGACCCACCATGGTTATCTGAGGTTCTGAAAACACAAGGCTGCCGCAAGCCTGATGAAAACAGCCACCTGTCAGAAGATGCTTGGACTCGTTCACCTTGTTATGACTCTATACTTGTGATGGAAGGTCAAGTTTCTGTCAACCCACTTCTGAGCTTTTAATTGCTGATAAGATGGTTGCTGCTGTCAGGGGGAGGTtagatttattaaaatgttgttgtCAGGGAAACTCACGCAAGGAGGACTGGGAGAGGCTCCATGAGTTACAGGATGTCTTAGACATTTTGCACAACCTGGGGAGAGctattatgtactgtactctgtaccaacTTCTGCACACAATTGTATTACTATAGGAGTATTCTAATACTTAAACAACGAGTCTGTGTTTCCTTTCCAATACTAATGTATGTTTGATAATTATACAGACCTGATCATCTGTTGAAGAAATTGACCAACAAAACCTTTTTACAATCTATGCTACGGATGAGTAACTGTGTCTAAGAGGGTGAATTCAAGCAGGACCACCGGGTCACCACTCTCCAAGGAATCGTGTGTCTCAACTACTTTCATTCCCACACTGGAACCATCTCCACGGCTGATTAGCCGTCCTCTGAAGAACCCTTTTCAGAGCAAGGACGAGGAAACATTCCACTAAGAgtaaggacactgacatcgtgaggacaAACAGAGAGTTACACCTGGCAACCGAAGGTGTGCTGTCATCAGAGAAGTCAGAACGCGGTCCACGAAGAGGCACCCCATCAGAGACGTTCAAAACtgaattacatcattatattctgacccattaGAGCGGCAGTTCGGGGCAAGGGAACTGTTCTGTAGCTATTGTCCCAGGGAACGTGGAGAGCTATGTCGCTGTTCAACCCCTTGGTGTGGGCGCGAGAGTTGCTACGACAGAGCAGAAGCTCCTCCAGACTGGTGCTGGTGGTCGTGTGTGTTGCCCTGCTACTGGATAACATGCTGCTTACTGTTGTCGTGCCCATCATCCCAACGTTTTTACATGCCCTGGATCCCCCTACACAGGACACCTTCATCCAGCATGCAGAGGCTCTCTGAGGAGGGCTTCACATTGACCTCAGTCCACTCCTTATACGACAACACTTCCTACAGCATCAGCTGCTCTGAGAGCAACCTGTCTGAGGCCCTCCTCTTCAACATCTCCAGAAACTCCAGCCAGGTGAAAGGCAGCACATGCCAGGAGGACAGTGCCTTCTTGGACAAGGAGAATGTTCGTGTGGGACTCCTCTTTGCCTCCAAGGCTCTGGTGCAGCTTCTGATCAATCCCTTCGTGGGTCCCCTGACCAACAGGTTCATGTTCTGGCTTCACAGcaagtgtttttgtgtgtgtgacaaaatCACAGCTAGCTAGGACAGTGTTCAACTTtgcatttattgaaaatgattaAATACAATACACACTGGTTCTAATCTTATCCTTATCTTTTCCCTCAAGAGTTGGACATCACATACCAATGTTTGCTGTCTTTATCATCATGTTTGTTTCAACAATAAGTATGTGTGcctgacactgacacacacttctAACTTGTTACACACAGTTGATAATGAGATATAATTGAGGTAGTGATCTCTAATATACATACCATGACTGTTTCACAACTCCAATTGCGTCATCTTTAGATTTGATTTTATCTTACCACAGTGCAGTCATGGTAACGGAGGTTGTGTCCTGTGGTTGTCAGTGTTTGCCTTCTCATGTGCATGCTCCTTGTTGTTTTTTGCTCGCTCTCTTCAGGGAATTggttcctctttctcctcctgtgTTTCACAAAAACCTCCCCAGTGTTGTAATAGAATATGAACCATTTTGTCCGAGCATCTTAACGTCTAAGTGAAAAGCATGTCTTCTCCCGTAAGACTGGGAATGTTGGCCAGTGTGTACACAAGTAATGAGGAGAGAGGCGTAGCTATGGGGATCGCACTGGGTGGACTGGCCGTGGAGGTTCTCGTGTTACATCTCTGCCATCAAAGATTTCACCAGATAGTGTAGATGGCACTCCTTTGCTGACCCTACTGAAGGACCCCTACATTCTAATTTGTGCAGGCTCTCTGTGCTTCGCCAACATGGGAGTTGCCATTCTGGAGCCCACACTTCCCATCTGGATGATGCAGACCATGTGCTCTCCCAAATGACTGCTTGGTATGGCTTTCCTACCAGCAAGCATTTCTTACCTTATTGGCACCAATTTAACAAAACGTGAAGGTAGGTTTTCGTTGATCCTCTCCTGGTTACTTCTATTTGTTCCTATCTATCAATTATCAATATATAAAAGTCTAGTCACTCAGAAAATAAGTTCTCATGTAAGCCTATGGGGGTTGTGTGAATCAGTGTTagtgtctgtgtgaatgtgtgtgtgcaggggcaGACTGCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586439 lncRNA upstream 11701 50689902 ~ 50699685 (+) True G516990
TU586449 lncRNA upstream 174979 50519839 ~ 50536407 (+) True G517000
TU586408 lncRNA upstream 205088 50473529 ~ 50506298 (+) True G516964
TU586372 lncRNA upstream 277389 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 326329 50384006 ~ 50385057 (+) True G516918
TU586530 lncRNA downstream 43184 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 44570 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 53378 50772524 ~ 50773077 (+) True G517101
TU586573 lncRNA downstream 54200 50773346 ~ 50773606 (+) True G517102
TU586579 lncRNA downstream 62803 50781949 ~ 50782422 (+) True G517108
XR_005052155.1 mRNA upstream 40589 50664006 ~ 50670797 (+) True LOC118964908
XM_036980389.1 mRNA upstream 81128 50541693 ~ 50630258 (+) False LOC110526111
XM_021606739.2 mRNA upstream 81128 50548509 ~ 50630258 (+) False LOC110526111
XM_036980390.1 mRNA upstream 81128 50574648 ~ 50630258 (+) True LOC110526111
XR_002473702.2 mRNA upstream 176053 50530062 ~ 50535333 (+) True LOC110525036
XM_036980393.1 mRNA downstream 62 50719208 ~ 50734901 (+) False LOC118964907
XM_036980394.1 mRNA downstream 141 50719287 ~ 50743120 (+) False LOC118964907
XM_036980397.1 mRNA downstream 28135 50747281 ~ 50759879 (+) False LOC110526112
XM_021606743.2 mRNA downstream 28136 50747282 ~ 50759879 (+) False LOC110526112
XM_036980396.1 mRNA downstream 28136 50747282 ~ 50761069 (+) True LOC110526112
TU585910 other upstream 959637 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1324174 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1404246 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1464933 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 1524063 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 1255 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 192682 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1559347 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1932794 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3206796 53925942 ~ 53955130 (+) True G521552

Expression Profile