RNA id: XM_036980397.1


Basic Information

Item Value
RNA id XM_036980397.1
length 5407
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC110526112
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50747281 ~ 50761069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcataagagatggtagcagcaacatggacaaacaccatcattaagtttgtcgatgacacaacagtggaataagtacaaaaataagttacaaataatgcaaAAAACGAACAAAAACTCATTtggttaggagcacgtaaaacATCAGCCATCTTCTTCAGCACATTCTCCGTCCGTTAGTACGTTTGTCACATGAGATATCTTAGACAGCACTATCCTGATTTTGACTCAACTTAGGTGAATGATgtgtcttgccatagagatccggcatttacaaaattacacggATTGGCCAGATGGTGGCGCTATAACAAGCGATTGAAAACTCTAACTTATAAATGTCATGCCCCTCACCCCATTTTACCTAAAGTCATGAAATGTGGTACATTGGTCCTTCTCCTCACAAGGAACACATTTGCTTCAGAGATCCATAAGGTCCGCCATGATGGATTTTTTTGCCATTTTGAATTTTGTGAAAAACACTTAAAATGCTACTCCTCTGGCACTGAATGACTGATCTGCACAAACCTTGATATGTGGCTTAGATGGACAAAGGTCTCTCAATGCAATATTTTCCAGACTACTACCtaaaacaacatgatcattaagCAATAAACATTCACCGGGGCATGGTCATGGTCACAATTTGGTACATATGTTGCAAACACTGTCAAGACTCAACATATGCAAGAACATTCCATCAACCACACGGTGGCGCTATAACGGGCACATGCTTTGTTACTTACAGTATAGTCTAGTTTGAATTGTTGTCACTAATGTTTACTGTTTTTGCTTACAGTTGCCTTGttatttttaactctgcattgttgggaaaagctcgtaagcaagcatttcactgcaaagTCTACACACGCTGTATTCGGCGCATCTGacaaatcaaatgtgattttgATTCAATTTTTCTCTCTCTTAACATGATGTGTACACATGCGCACACAGGGAGAGTGAACTTGCGGTAGTCCAGGCGGGCTGTTTGATGCAGGTCTGCCTATTTTAAAACCTACCCTCGAGCCAGTAGGCAATGGCACCTGCTCAGTTCCAGGTGAATTTCAGTTATCAAAACACAGTACTCCCTACCCCACTAAAACCCATGCACACCACTAATTCATTCCAAGCTGACAGAAATATAGTAACAGTACATGACTATCATTTATGCAAAGAAAATAATTCAAGCTATAAAGGAGTTATCCCTCTTAGATTCACATGGTACTTTTAAGCCAtgttcacattggcagtttgaagtgactcaaatccaTTTTTTTTGCAAATCCGATTAGAATCTGTTATTTTTCCTGAAGTCTATACAGCCCACCACCTTCAAAGGTGCTTTGAAGtcagatacaaatctgattcctggccagGTGATTTGTGTCTGAATGGTAAAATCTGATTTGCCCTCAAGTGGTTTATTAACTTTTATTTGGCATATActgttgcttgctagctactctgttgaGAGTTTGACAAGACCATATGGTAGCTAATTATCTTGTTAATTGCTTACAAACAAATTAGTGAATGTTATAGgaagctaaacagctacctagctagctagttgactgactTGGCTGGCCAAAAATGACTCATCTTATCCTTTGGTGCTTTAAAAGTGTTCTTTGAGCATTCACAGCAACTGGGAAACGTCTATGGCAGGAATTGTTGTCATCTTAGCTTGCTACAAATCTTCTGAGTGATGGGAAGCACGAGCACCACCACCAATTAGCCAACACCACTGTGCACACTCCTGTCATTACTATGACTAGCATAGCCATGTCATCAAATTACCAGTCCTAATTTGGTCACTTGTAACGTGATATTTGGACAGTAAGTATTTCAAAACGGATTTGAtaaacaaaactgatttgagcattaaggcctgcagtgtgaacaatTCTTTAGAGAGGCGAGTGGTGTGGATTTCAGGAGTTCTCAAAATCCTTCATTTTCTAATTGGACCAATTTTACACTTTGATGATATGATATTTACATATCAACCAGTGAACAAACAGTGGCTCCAGGTTTTCCAGCAGCAGGTTTGGAGGTGTACACAGTGAGAAGTGGATGTGCTGCCTTTTGTTTACAGTTTACAAGACTCTCTTCCTGGTACGCTGGCATCACAGGAACCTGTTGACAGAGCCAATTGGACAAAGGTGCAATGCAAACAGGCCAGGGGAAAATACCAGGTTGTTCCACAGTTTGAAAAGGGTTAATGTGGCTGAGATGGCAGATAAAGCTTATTGTGAACAACACCAGCCTCAGGttatacagcccccccccccccccctctcaataAAGAGCAGCAGATGTAGACAATTACTTCCCCCTGTGACGCAGAGTGAGCTCAGGTCAtggagtgtgtacagtatgtgtgcgtgcgtgcatgtgtttgtgagGGGGCTGTGACTACCCTATGAAAAAAGGGCAGCCACAAGAGGACTTAAATAGAGCAACAGGAGGATGAGATGACCACTTGTATCCGATGTGGATCTGCAGGATGTATCTGAAGGTAAGAGGTCTTGACTCAGGTCGAATTGGACTTAAGGGATCCTCAATACTTTACTATAGACCTAACTGAAATTAATGAAGGATGAGGCTAATAAATTTTCGAAATGTTAATTATAGTTTGTTCTGTAATCATTAAAGGTGCAAATAATATGACTCAAAATGAATTGTAATGTTATCCATTGGTTTGTTCCCACCAGTTACGCATGGGCTATATGATGTGTCAATATAGTCATtttacctttctttaactaggcaagtcagttaagagctaATTCTAATTTCCAATGACAgcgtaggaacagtgggttaattgcctgttcaggggtagaacaaccttgtcagctcaaggatttgaacttgcaatctttcggttattagtccaacactctaaccactaggctaccctgccataaGATGACTAAAGATAAGAGTAAGCTATTTAGATTTCTCTGCAAACCTAATTTGCAGAAATGAATCCATAATCACCTCTGTTACTGAAAGACATCGTGATTTTCATAGAAGATtggtactgtgtgtactgagccCTTTGCACATTTGTTCTTGACTAGAATGTGCTAAAACAAGATATTATGGAGCTGTGCGATCAGACGTTCGTTTAACATGATGTTTAACCCGTCCTTATTTACAGTATATGAGCACCACGGCAGGCAAGCAGGCTGCACTTTACCTTGATcagaacagaacacagcaggCAAGGTTCGGAGAGGGCCCTGGAGGAAGTCTAATCCTATTgctgagagaaaaaaataaatccTCGGAGCCAAATGTCTCTCCAGAAATACCATGCCTGACCATCCAGAAAGCAGCCACCAGTTCACTCCATTAGCTACCACATCTCAGCTTATTAAATTGAAACGGATGGTGCATGAGTGGTGGCTGCAGGGCAGGGATAGGTAACATTGGAGGtagtacacacagagagatgagacCCCTTCAGGATCATTTACGATTACGGTTTTATATTTTCAGATGAAAAGAGTATACCTGGAGTAGGTTATGTGTAGTTAGTTTAGGACTAACTCAAATGTAGTGGTGTAACGATAATGTACAGACACGGTTGTGGGGACATATTCTTGTGACTAAATTGGTAAACAAATGTTGATGTTGTCAAATATGTTTTAATAATCAGCATATCTGTTTCTCATCCGAAAAAGAGAACTGTTCTGTAGCTATTGTCCGTGGAGAGCTATGCCACTGTTCAACCCCTTGGTGTGGGTGCGGGAGTGGCTGCGACAGAGCAGAGGCTCCTCCAGACTGGTGCTGGTGGTCGTGTGTGTTGCCCTGCTACTGGATAACATGCTGCTTACTGTTGTCGtgCCCATCATCCCAACGTTTTTATATGCCCTTGACCACCCGACACAAGACCCCTTCATCCAGCCAAGCACACAGAGGCCATCTGAGGAGGGCTTCACATTGGCCTCAGTCCACTCCTTCTACGACAACACTTCCTACAGCCTCAGAGGCTCTGAGAGCAACCTGTCTGAGGCCCTCCTCTTCAACATCTCCAGAAACTCCAGCCAGGTGAAAGGCAGCACATGCCAGGAGGACAGTGCCTTCTTGGACAAGGAGAATGTTCGTGTGGGACTCCTCTTTGCCTCCAAGGCTCTGGTGCAGCTTCTAGTCAACCCCTTCGTGGGTCCCCTGACCAACAGGGTTGGATATCACATACCAATGTTTGCTGGCTTCATCATCATGTTTGTTTCAACAATAAGGCTGGGAATGTTGGCCAGTGTGTACACAAATGATGAGGAGAGAGGCGTAGCCATGGGGATCGCTCTGGGTGGATTGGCCATGGGAGTCCTCATTGGAGCGCCATTTGGCAGTGTGATGTATTCATTTGTGGGGAAGACTGCTCCTTTCTTAATCTTGGCTTTCCTTGCAGTATTTGATGGagCGTTACAACTTCTTATACTTCAGCCATCAAAGATTTCACCAGGAAGTGTGGAGGGCACTCCTTTGCTGACCCTTCTGAAGGACCCCTACGTTCTCATAAGCGCAGGCTCTCTGTGCTTCGCCAACATGGGAGTTGCCATTCTGGAGCCCACACTTCCCATCTGGATGATGCAGACCATGTGCTCTCCCAAATGGCAGCTTGGTATGGCTTTCCTACCAGCAAGCATTTCTTACCTTATTGGCACCAATTTATTTGGTTTGTTGGCTAACAAAATGGGAAGGTGGCTGTGCTCCATGATTGGGATGTTTATTGTTGGCATCAGCCTCCTTTGCGTTCCTTTTGCAAAGAACATCTATGGTCTTATTGGTCCAAATGCAGGCCTGGGGTTTGCTATTGGAATGGTGGACTCCTCTATGATGGCCATAATGGGATACCTGGTGGATATTCGCCATGCCTCGGTCTATGGCAGTGTTTACGCCATAGCTGATGTCGCATTGTGCATGGGTTTTGCCATTGGTCCTTCGATAGGGGGCTCCTTGGTCAGGGCCATTGGATTTCCTTACCTCATGGTATTCATTGGCATCATCAACATCTTCTATGCTCCACTGTGCTTCTTCCTGCGTAATCCTGCCATCAGGGAGGAGAAGATGGCCATCATAGACCAGGAATGCCCTCTGCACAGGAAGAGCTACAACACACAGAAGGAGTGTCGAGAGTTCCCTTTGAGTGACGAGAGCGAGGAGGAAACGGAGGAGTAACATGCTCCTTGTCAACccaacacacacatttttttttacagtgaaaGAGCAGAGGCATTGTTCATAATGCCTTTGAATTGACATGTTGTCTAGAAAAGGCATTTTGTTAGCACTTATCTGTATTCAAAGTTTCCTAATGACCTCTGACCTTATTGCTGGAAATAACAAACAATGGCACCTGTGTTTTTAATATGGTATGTATAGGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586439 lncRNA upstream 47596 50689902 ~ 50699685 (+) True G516990
TU586449 lncRNA upstream 210874 50519839 ~ 50536407 (+) True G517000
TU586408 lncRNA upstream 240983 50473529 ~ 50506298 (+) True G516964
TU586372 lncRNA upstream 313284 50433732 ~ 50433997 (+) True G516933
TU586357 lncRNA upstream 362224 50384006 ~ 50385057 (+) True G516918
TU586530 lncRNA downstream 2451 50762330 ~ 50763117 (+) True G517068
TU586531 lncRNA downstream 3837 50763716 ~ 50764117 (+) True G517069
TU586572 lncRNA downstream 12645 50772524 ~ 50773077 (+) True G517101
TU586573 lncRNA downstream 13467 50773346 ~ 50773606 (+) True G517102
TU586579 lncRNA downstream 22070 50781949 ~ 50782422 (+) True G517108
XM_036980394.1 mRNA upstream 4161 50719287 ~ 50743120 (+) False LOC118964907
XM_036980393.1 mRNA upstream 12380 50719208 ~ 50734901 (+) False LOC118964907
XR_005052154.1 mRNA upstream 28135 50711386 ~ 50719146 (+) True LOC110526117
XR_005052155.1 mRNA upstream 76484 50664006 ~ 50670797 (+) True LOC118964908
XM_036980389.1 mRNA upstream 117023 50541693 ~ 50630258 (+) False LOC110526111
XM_036980398.1 mRNA downstream 24332 50784211 ~ 50791053 (+) False tti2
XM_021606749.2 mRNA downstream 24333 50784212 ~ 50791053 (+) False tti2
XM_021606751.2 mRNA downstream 24932 50784811 ~ 50791053 (+) False tti2
XM_021606750.2 mRNA downstream 25109 50784988 ~ 50791053 (+) True tti2
XM_036980400.1 mRNA downstream 57849 50817728 ~ 50846599 (+) True LOC110526125
TU586434 other upstream 12045 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 995532 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1360069 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1440141 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1500828 49233579 ~ 49246453 (+) False LOC110526066
TU586543 other downstream 151949 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1518614 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1892061 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3166063 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3510046 54269925 ~ 54270259 (+) True G521914

Expression Profile