RNA id: XM_021606750.2


Basic Information

Item Value
RNA id XM_021606750.2
length 2150
RNA type mRNA
GC content 0.49
exon number 8
gene id tti2
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50784211 ~ 50791053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATCGACTGTTTGTTTCTGTATGGGGTGCACCTATCTGTTATAGCGTGAGCCAGAGAAGCTCCGCCTACTTCTCTCATTCCAGGAAGTATATTGCCGCGGTTTCGCCCTTCGTCAAACCATAAGCTTCAAATCAAGAGTCCTTCTGCTATCAATACTAGAGCTATGAATACGAATGGTTATAAAGTATCACTCAACGGTGTCTAGCTTTAGTTTAACGCATGTTTTATAGTATGTCTAGGTAGCGAGCTTGTTAGTCCATATGGTCCCATCGTAAacggctaactttagctagctagttgacaggtTTAACTTTTACGGATAAGCGTGCTATTTTTTTTATAGATAGCACACATCTACAATAAGATATTTCAAAGATGGACTTGTCCCATATGCTGCAAGACCTACAACAATGTAAGGCTCCTGAAGAGGGACATTCCCCAGCAGAACCTGATACACTGCTCTCCCGTCCAGTGGCTGAGGTCCTGCTTCATGTCCAGGAGAAACTCAAGGCACCAGGACTTACCACAGAACAAAGTGGAGAAATCCTTCATATTGTGGAGCAGCTATTCAGACTGGGGGACAGACACTGGCTTTTTTCTGAGTGTTGCAGCAATCAGAGCACAGACTTGACAAGGGAGTATGTAGACTTTGTGAGCTCCCTGACACTGTATGCTGCTTTGCCATTGTGTGACAATGACAGTGGCACACTACCAGAGAGTTCCTTTGAGGCCATCCCGGCCAGAGCCTGTGTCGTGAGTTCAGTAGTCTTAGCCCTGGTACAAAGACTTGGGAATGGGGGAGAGGTTGTTTCCAGCCACTGCCAAGCCACCTCCTGGGTCTTCCTCACAGGTCCACTTGCCCCCctcttgtgtgtgtttgcgttgACTCATATGCAAGAGCAGGCATGGACCAGTGAGGCCTCCAGAACAGCTGCATCTAACCTCCTGGACTCAGTGGTTCAGGCAGGGGACTGGGAGACCACCTCACAGCTTCTGTTTGGGAAGAACAACACAGAGCGCCAACCAGGAATCCTTGGCTCCATCTTGGAGATCCTGCAGCCTGATTTAAAAAGGGACAGCTGGAAGCGAAACCAGGCCACTAAGCATGTATTTGCCTGGATCGTCATGCAGGTGGGCCGGCCGTGGCTGACCGACTATCTGGAGAAGGTTTTCCCCCCTTCACTGCTGATGTCAGATGATTACTGCACTGACAACCAAGTGCTGGGAGTACGCTGCCTGAATCACATTGTCCTCAATGTGCCTGCTGCCGATCTCTGTCAGTACAACAGGGCCCAGGTGCTCTACCATGCCCTCTTCAACCACCTCTACACATCTGAGCCTCAGCTTATTGAGGTGGTCCTTCCATGCCTGATAGATTTTTTGCCTGTGTTGGAGAAAGACCCTGCTTGCACTGGGCTCCCCAGGAAACCTAACCGTTATGACGAGGTGCTGCGGCTGACCCTCACCCATATGGAGATGGAGCATAAACTTGCACTTCGGAGTGTCTATGCCAAGTGTCTGGAACACTTCATTGAAAAGATGGGTATCGTCATTGTTCGCCATCTGAAACGATTGGAAAGAGTAATCATTGGGTATCTAGAGATCTCAGACGGTACTGAAGAACAGACTAGACTAGCTATCCTGGATGCTTTAGAAAAGACCCTGCTCATCGCCTGGCCAAGAATGGAGTGCCGTCTTTCCGCCCTGGTGCAGAGTCTGTTGAGGCTAGTGTGTGACCTGTCCACAGAGTCCATACCCCCAGCAGTGAGAGAGGAGCTTGTCACCAAGGCCACTCATTGTCTGCTGCTGTTGGACCACTGCACCCAGGGCAAGCTCAAGATGCTTCTAAAGGATGTCGACAGCAGCTGCACCAGCACCTATGTGCAGAGATGCATAGAGACAGTCACAATGGCCCAAACATGACATATCTACAGTGTTTATTCCTCCATTGGAAATGAAGCCCACATCTATGGATATCTGGAACAGTGATATGATCAAGATTAATGTGGTTAATTGAGCAGGACTGACAGAACCTATGTAGTCTGGCAATATAAGACTGACCCAAGTGCTATTATACAGTAAACTGACATGTTCCATTCTGTGTGTTACGGATCCACTGTATTTATTAAAACATCGCTGGCTGGGGA

Function

GO: NA

KEGG:

id description
K23115 TTI2; TELO2-interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586579 lncRNA upstream 2566 50781949 ~ 50782422 (+) True G517108
TU586573 lncRNA upstream 11382 50773346 ~ 50773606 (+) True G517102
TU586572 lncRNA upstream 11911 50772524 ~ 50773077 (+) True G517101
TU586531 lncRNA upstream 20871 50763716 ~ 50764117 (+) True G517069
TU586530 lncRNA upstream 21871 50762330 ~ 50763117 (+) True G517068
TU586587 lncRNA downstream 13610 50804663 ~ 50807357 (+) True G517115
TU586635 lncRNA downstream 96222 50887275 ~ 50887712 (+) True G517159
TU586638 lncRNA downstream 108125 50899178 ~ 50900704 (+) True LOC110526127
TU586642 lncRNA downstream 112645 50903698 ~ 50903955 (+) True G517166
TU586542 lncRNA downstream 120775 50911828 ~ 50922097 (+) False LOC110526128
XM_036980396.1 mRNA upstream 23919 50747282 ~ 50761069 (+) True LOC110526112
XM_036980397.1 mRNA upstream 25109 50747281 ~ 50759879 (+) False LOC110526112
XM_021606743.2 mRNA upstream 25109 50747282 ~ 50759879 (+) False LOC110526112
XM_036980394.1 mRNA upstream 41868 50719287 ~ 50743120 (+) False LOC118964907
XM_036980393.1 mRNA upstream 50087 50719208 ~ 50734901 (+) False LOC118964907
XM_036980400.1 mRNA downstream 26675 50817728 ~ 50846599 (+) True LOC110526125
XM_021606758.2 mRNA downstream 108043 50899096 ~ 50901094 (+) False LOC110526127
XR_005052159.1 mRNA downstream 120644 50911697 ~ 50922106 (+) False LOC110526128
XM_021606766.2 mRNA downstream 200520 50991573 ~ 51017128 (+) True LOC110526132
XM_021606773.2 mRNA downstream 322933 51113986 ~ 51128144 (+) False znf608
TU586434 other upstream 49752 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1033239 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1397776 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1477848 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1538535 49233579 ~ 49246453 (+) False LOC110526066
TU586543 other downstream 120775 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1487440 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1860887 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3134889 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3478872 54269925 ~ 54270259 (+) True G521914

Expression Profile