RNA id: XM_021606766.2


Basic Information

Item Value
RNA id XM_021606766.2
length 3034
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC110526132
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50991573 ~ 51017128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGGCTAAACTTTGTCACAAAATATTACTCAGAATGGACTTTTTATTATTGTACAGGGTAAACCATTCCTGGATAGTTACTTGCCTATTAATCTTTTCCCATGTTATGGTGTCTTGTCATATGGAAGAACATTCTGAGAGGCGCCAACTTCATGAGTTAACTGTAAAGAGGAAAGACCTGAAGCGATGTGACAATGATAACCGCGTATGCGTCACTGACGATAGTGACTGTGTCCCCAGATCTCATGTGTCTCATGAAAGGGTGAATATATCATGCTTTTTTCTACTCACTGACTATGCTCTGACTCCGTATCCTCAATGCCTTTGGAGTCAGGAATATAACATCAATGCAGAAAGCATGCACTCTCTCATTTTCAGTCAGACCACTCCGATTTATTCTTGTATGGGAATCTTCAGCTTTGGTGGACGAATGAATATAACTTTAAAAATTAAGAACAACATGAACggaatggagtcgtggtcagagcCCTACGAAGTGGCAGTACAAGAAGCAATAAAAGCACCTTGTCCTACCATCACATCAGTCAATGGCTCTGACAACTCACTGGAGGTGACATGGAGGATCAGCAAGTTGCACACTAGATGTCGGGTCCGTTACCGAATGGCCACTGACAAATGGACTGAGATCCCAGCCTATGTTCTTGTGGAAAGTGCTGAAAAAGCAGTCTACACGATTGAAGGCCTCAAGCCTTTCAGCAGCTACATCATTGCCGTTTCCTGTATTTTGTCATTTGGTCGCTGGAGTGACTGGAGCATGGAGACAACTGGGACAACACTGGAGAGTGCACCCTCTAGACCGCCAGATATCTGTTATCATATGGAGACGGTGAACAAACAAGGACCTCATCACCTTATGCTTATGTGGAAGgcCCTTGATGTTTATGATGCTCACGGACATATTCTTGGGTACCAAGTGAGCTACACACAAACAAAGCACCCCTTTCTGAGTGTGACTACTAACACCACAGATCTGAAGGTGGTCCTTGTGGTGACCGAGGATGAGTTGGAGGTCACAGTTATGGCGTACAACAGCGCTGGTGGATCTCCTTACTCTCATCTAAAGATTGACCTGAGTCTTCATCAGACTCTACCCTCAGTGAGAAGACTTTGGGTGAATTCTGAAGATGATAGGCTAGTGCTTCATTGGGATGTGGGACACATATCCCTGCCAGTTAGTGAGGTTGCCAATGAGTGGGCCACTGATGCTGCACATCCCACATCCAGTCACTGGAAACGAGTGAATGGCTCCACCAGATCAACAGTCTTGAAAGACCATCTTCAGCCTGGGACAACATACAGAATCAATGTTTACCCCATATCAAATCAACTGTGTGGGCCACCCAAGTCAATCTTTGCCAACCTAGAGTACGGAACGCTTTTAGGTGCAGTCGGAATGCACGTTGTGGATGTGACTAAAAACACAGTGACTGTACAGTGGGAGTGGCAGAGAAAGGAGGTTCACCCCAAGGTTCTCAGATACAGAGTGATGCTGCACCTGGGGGAGATACAGGTCGAATCTATCCCTGTCTGGCCAGAGGTATGGCAGCACACATTCTTCAAACTCCGCGCAAACACAGGCTATTCTGTTAATTTACTGGCGGAGACTTCTAATGACAACATTTCAAGAGAAATTATTCAGATTAAAACACATATTTTTGAACATAATGAAATAATGTTCACCTTCTGTCTAATCGCCCTGCTTACTCTTGGCCTCGGAGTTTTCTTGATCTTATCCAGAACTGTCTACAAAACATATTTCTTTCCAAATATTGCTAACCCTGGGGCCAGTGTTGTTGGACGATGGCTTTTGGAGTCACACCATGAGAAAAACCGTGTGAAGAATGTACTGAAGCTGGAGGAGTTCTTAGTCACTGATCTCTCAGAAGAAAACGGCTTTGTTGAGCTGGGGCAAGAAAGGCCACCTGTGAGAGAGGACGGGATTTTTAACCCTGGTTCATCTCACAGTACcctcaatataaaatatatttttattccgCAAAATACAGAATACATTGAAAATACTCATAaaagtaacagagagaacagggattCCTCCCTGATGTTTAACAATGTTGCCCACATAGAGAATGGCCAGGGTACACACGTAGAAAATTGCCAGGGTAGCTTACTTCCAGAAAGCACCCAAATACAGTGCAATTTTGACTATATAAAGAACAAGCATACTCTTGAAAAATAGCATTTTAAGAGAACACCCCAAGCAATGTTGAGTAAATTGAAAACGCTTTTTCTCAGCAATAAAATGCTCAATATGGATCGTCTTCAATGAATGCCGTTTTAATATTCTCAATTAACAAACCTagattttacatttacattttgtaaATGTAAACCATTTTAAGTGCTACTGTTCTTTATAATGTTACAGGCTTTGTTTTTTCCACTTATGTTTTGAGGTGGGACTTTAGCAGGTATAGCTCGTTAGCACATAGGGCGcaccgattggtgtcacctcgttagtcagtatgtgttaaaCCTGTGCCGACCTAGTGctcttgagagatgtggagggttaacacttTAATTCCGCGCTCCTTCTTTTTGATTTCTAGGCAAACAGTCCTTTATCTGATCATCCCTGTTTTCGTTTTGCTCcactttttggtttgcttcctgtataagtttggtgtgtttttttttttgtgcctcTTCTCTTTTTTGCAAATTTAGTGGGCTCTTGTGGTGGATGTCTTTAAGGTTCCACGTGTTGTTACTTGTCAACGTGTTGTTACTTGTCAACTTTCAGTGGGCACCCCCACGTCTTTCAGAACTCCCCCTAAAACCCCACTTGTTTCAttttggttgttgtcagtgactcGTTAGTTCCCCCTTCTGTTTGAGCGACATTTTAGGTCTTGCTGGGGAACTTAATTAACAATGTATACAGTATTTGTTCTGCTGTAAAATATATTGTacatatatttttacattgtatatTAAACTTCAACCCTATCCCATGTCATTTTATGGGTTAACTATATGGGTAAACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586539 lncRNA upstream 7378 50980226 ~ 50984195 (+) False G517073
TU586540 lncRNA upstream 9886 50980226 ~ 50981687 (+) True G517073
TU586664 lncRNA upstream 32434 50958940 ~ 50959139 (+) True G517186
TU586659 lncRNA upstream 37708 50953431 ~ 50953865 (+) True G517181
TU586542 lncRNA upstream 69476 50911828 ~ 50922097 (+) False LOC110526128
TU587535 lncRNA downstream 64585 51081713 ~ 51082079 (+) True G517961
TU587552 lncRNA downstream 76815 51093943 ~ 51094182 (+) True G517978
TU587572 lncRNA downstream 92654 51109782 ~ 51110093 (+) True G517998
TU587589 lncRNA downstream 116531 51133659 ~ 51133895 (+) True G518012
TU587613 lncRNA downstream 131029 51148157 ~ 51148377 (+) True G518036
XR_005052159.1 mRNA upstream 69467 50911697 ~ 50922106 (+) False LOC110526128
XM_021606758.2 mRNA upstream 90479 50899096 ~ 50901094 (+) False LOC110526127
XM_036980400.1 mRNA upstream 144974 50817728 ~ 50846599 (+) True LOC110526125
XM_021606749.2 mRNA upstream 200520 50784212 ~ 50791053 (+) False tti2
XM_021606773.2 mRNA downstream 96858 51113986 ~ 51128144 (+) False znf608
XM_021606774.2 mRNA downstream 96860 51113988 ~ 51128144 (+) False znf608
XM_036980405.1 mRNA downstream 97585 51114713 ~ 51128144 (+) False znf608
XM_036980404.1 mRNA downstream 99756 51116884 ~ 51128144 (+) True znf608
XM_021606776.2 mRNA downstream 142306 51159434 ~ 51225264 (+) False LOC110526137
TU586543 other upstream 69476 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 256337 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1239824 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1604361 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1684433 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 1261365 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1634812 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2908814 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3252797 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3862571 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile