RNA id: XM_021606776.2


Basic Information

Item Value
RNA id XM_021606776.2
length 4395
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110526137
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51159434 ~ 51225264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATATATCCGTCCTTGATGCACATGTGTCTCGCAAGGCTGCAGAATCGTTTGCAGTATTGATAATGTTATTTTCGCTGCGTCGATTTCTACCGGGATCTCCATGCTAAAAATGTTGCATGGAGACACATTGCCAATATGATTGGATTACCTGGTTAGTTGAATGTGAAAGAATTAGCTGGAAAGTGGAAGATAGGTGCTGGCAATTAGCTAAACGATCTAGCAAAGTGGTTAGCTTTGTAGTTAGCTGGTTTGGCTGTTTTATGAACATCTGTAACAACGCACGAGTTGAAAATACTGAATTCTTGCGGTATACAGAACGCACCGCAGCATCACCAACCCAGCGTTGCGGACTGCTTCATTAACAATACGACTTCAGCCGGAACACATAGTTTGTGCAACTTCTGGACATGAGGCTTTATGCGATTCTGCAAATGTAACGAAACAGAGGAGGACCTACCTAAATGTGTCCAATATAAACGTTCCAAAACGTTTTCCGTTTGGAGTTAAACGGTTGCTACAGACGAAACgatttgcaacagaatcggcgtaatgaatacacccgaGGTCTCATTCGAAACTTCCGATTTTGAACGAAAGGGGTGGCGGCAAATAATAACAACAAAGCGGGGTATGCAACGGGCAGACTCCCTGGTGAAACATATTTCTGACAGCCATTGCTAGATAAGTCTAGCAAGACAACCAGAAACACTTTGTTAAAAAATAAAGCTAGCTAGCCAGTCTAACTTACACAAATGCCATTATGGCATCGAAGTCCGACCAACTTCTCATCGTGGTGTCCATTCTTGAAGGTCGTCAATTCCCAAAGAGCCAGCGCCACAACCTTATAGTACATGCAAAGTTTGATGGAGAGCAGTTGGCTACAGACCCTGTTGATCACAAGGAGCAGCCTCAGTTCTGCACAGAGTTAGCCTGGGAACTTGATCGCAGGACCTTGCACCAGCACAGACTCCAGCGCACACCCATCAAACTACAGTGCTATGCTGTTGATACAACCACATCTGTGAAAGAGTGTGTTGGATATATTATTCTTGATTTAAGATCTGTGCAAGAAATCAAACAGGCTCCTAAATGGTATCCCTTACTAAGCAGCAAGTACACCAAGTTGAAGCCAGCCATTCTGCTCACCATTGCACTGGAGAATGACACCAAACAAACAGAGTTGTCACTAGAACGATTCAAGGCCAAAAAAGCACCACCAAGACAAGGTTCTCCTGTGTTGAGTAACCTTTTTCCAGAGAAACTAGAGGCTGTTCTGAAAGAGGATGAAGGATATCACCAGATTGGACATCAAGATTATTGCACTGActtgtttgttttgtctgttaCTGTGGCCTTTGCTACCAAGCTTGAACAGTTGATTCCCAGTACGATGAAGCTGGTCGGTGAAGGGTCTGAGTTTTTCTTCTATTATACCCTGCTGGGTAACGACATCACCAGTGAACCTTTCCAAAACCTGATTAGCCCCAGCTTTGAGCCAGAGAGGGCCTCGGTCCGAATCCGCAGCAGTGATACGGTTCTACTGGCCTTTCTCAGCCTGCAGCCCAGTCTTCAGGTCCACCTCTGCTGTGGGAACCACTCCCTTGGCAGCACAGAGGTCTCCCTAGCTGGCCTGGCTAAGAGCAGTGTGGACCTGGAGAAGCAGGTGGCCACAGTGGAGGGGGCCTTCATTCTCCAGCCTCCTAACCGAGCCAAGCAAAGCTTGCCTCCTGTCCCCATGGATCTGCAGCCCACTGTGGGGGTGTCCGTCACACTCAGGAGAGAGGCTCTCACTACTCCGGTGGGAGCTAATGCAGAGGGAGATGGTCCTCTGATTCCACTGAAGACCGGGACTGTGGAGCAcgtcctccctccatctccccctgctGAAAAGTGGCCCCGAACTCCCTCACCTGGCATAAAGTCCCCCATTAAGTCTCCCACGTACCTAGCTGAGTCCCCTCCCAACCCCCTCACAGAAAGCGAGGCTAACAGCCTGCAAGTAGAAGCTGCCTTGCAGGCTCAACCTCTCCCAACTGGTTCGGTCCTTGCTCCGTGCCAAGTGGATGACGAGCCTGAAGGAGGCCTGTCCTCGGTCAGCGTCTCTGCACCAAAGATAGCCATCCCCTCCTCGGCACATCACTACTGTTTCTCCATGGACCTGCGCAGTGTCCGCAACATAAACCTGGGCTTCCCTGTCAGCTGCACACTCCGGTATGCATACCAGTTTTTCGGGAGTGCCGCCCCCATCATGACCAACCCCCCAGTGGAGGTGAAGAGGAACATGGAGGTGTTCCTGCCCCAGTCGTACTGTGCCTTTGATTTTGCCGCTCTACCTCACCAAGTCCAGGACACCTTCCTCAGGGTGCCcctagtggtggaggtgtggaaCAAAAATACCAGCTCCAGAGACATTCTCCTGGGCACGGCCAGCATACAGCTGTCCCACCTCCTGACTGCAGAGAAGAGCCGCTTCCTGGGCCCCATGGGCCAGCAGCACTGGAGGCAGACCTTCTCCGAGAGGATCCCAGTCATAAAGGCCCAAGGgatttcagcggcagggactggGCCCAGTGAAAAGGTGGCTGAGCTGTGCTACGTCACAACCCTGGAGAACCTTGGTTTAGTCAAGGTCCAAGATATTGTCATGTCTGAGTCCTCCCAGAATGGGTATTCTGTGGCACAAAAGACGGTGCCAGCTCTGCGACCAGCTCCTCCAAGCAGTGCAGGCGGAGTCCCCACTGAGCCCCGCGAGACACTGGAGTACAGGGCTGCCCTGGAGCTGGAGATGTGGAAGGAGATGCAGGAGGATCTCTTTGATGACCAGCTGAAGAAGAAAGAGCTGGGCCATATGCAGGCGTTGGCCGAGGAATGGAAGAAGAGGGATCGGGAGCGTGAGTCTCTGGTCAGAAAAAAGGAGGTAGAGTACAACATCTTGGAGGAGCAGCTTCAGAAGATTCTGGCTGActtggagaagagagagaagcatcTAGGCCATGCAGAAATGGAGATGCAGCGCTTGCAGAGGGAGATGCGGGCTGAGCACGAGTTAAGCATGTGCAAGCTGCAGGAGAGCGGCCGGCGGCTCCGCGAGGACTGCACTCACCAGGTGGATCTGGAGAGGTCAAGGGTCAGGCAGCTGGAGGAGGAGCGTGGCAGGCAGCAACAGCAGATGCTGGATGCAGAGAACAAATACAAGCTGTTGGAGAAGGAATACCAGCAGTTTCGGGAGCAGCAGAGCATTCGCCCTGAGATCAGACTACAGTCTGAGATCAACCTGCTAAGTCTTGAGAAGGTGGAACTTGAAAGGACACTGGAATCGACGACAAAGTCTAAACTTCATTACAAGCAGCAGTGGGGGCGTGCTTTGAAAGAACTGGCCAGATTCAAACAGagagagcaggagagcgcCATGACACGGCTgaagaagcagcagcaggagctggAGACCATGAGGCTGCGCTACCTGGCAGCCGAGGAGAAGGAAGCCGTCAAAAGCGAGAAACACGAGCTGGAGGACATCAGGAACGAGCTGAACAGGTTAAAACAACAGGAGGACAAGAAGCCATGGGGCAGCAGCTCTGCTGGCCCCGCCGTGTCTCTCAACGAGAGTGCCGATGATCACCTCAGCCGGctgctggaggagagagacactcTGTTACGCACAGGCGTGTATACACACGAAGACCGCATCATCAGCGAGCTCAACAGGCAAATCCAAGAGGCCATGGCACACAGGGTGGACCACTAGTCTAGCATCTCATGCGAATGCATGATAGAAAACCAGCCATCAGACTCATCTAAATGTGAAGTGTTGATCAATTCCTAGTGTGCCAAATGGTCCGAATTGGACTATCAGATCACTTCAAGCTCCAGGGACAGTAGAAAGTTAGCACAAAGGCAGAAAACTTGAAGGAACAAGTGAGAGTGTCTGCCTTTGCAAAGGATTGACTTTGTTTTGTGTAAGTGTTTTTGGTTATTTTTCCATTATCATTTTGGCTTTCTTTGTTACATTTGTTTTTATTAGTGTTATTATTAGACTAGATTATCTGTTTTATACTATGGGCTAATGTCCACATTTTAGAGATGATTGTGGAAAGGGAAAGGCCTAAAATTATTTTACCAAGCGTTACATTCCAAATGGATATGGTTTAAATTATTAGAACGAGACACTAGTGGTTGAAGGTTCGTTGGTGTGTTTATACTGAATAAGTTGTCTGTATACACCAGGTGGCGCTGTAACATCAGCAAAGCTACATGTAAATTTACCAGTTTCTTTTTTCAGATGCAGAATTAGTGTGATAATTATTTGTTTGTCATGACTAACATGCATAGACAATTCTTGAATGTATATTGATTTGTgtgtattaaataaatacattattttggGATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU587613 lncRNA upstream 11057 51148157 ~ 51148377 (+) True G518036
TU587589 lncRNA upstream 25539 51133659 ~ 51133895 (+) True G518012
TU587572 lncRNA upstream 49341 51109782 ~ 51110093 (+) True G517998
TU587552 lncRNA upstream 65252 51093943 ~ 51094182 (+) True G517978
TU587535 lncRNA upstream 77355 51081713 ~ 51082079 (+) True G517961
TU587716 lncRNA downstream 4732 51229996 ~ 51230526 (+) True G518132
TU587717 lncRNA downstream 6261 51231525 ~ 51231822 (+) True G518133
TU587768 lncRNA downstream 68924 51294188 ~ 51294400 (+) True G518182
TU587771 lncRNA downstream 75131 51300395 ~ 51300690 (+) True G518185
TU587772 lncRNA downstream 76004 51301268 ~ 51301538 (+) True G518186
XM_021606773.2 mRNA upstream 31290 51113986 ~ 51128144 (+) False znf608
XM_021606774.2 mRNA upstream 31290 51113988 ~ 51128144 (+) False znf608
XM_036980405.1 mRNA upstream 31290 51114713 ~ 51128144 (+) False znf608
XM_036980404.1 mRNA upstream 31290 51116884 ~ 51128144 (+) True znf608
XM_021606766.2 mRNA upstream 142306 50991573 ~ 51017128 (+) True LOC110526132
XR_005052160.1 mRNA downstream 487526 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA downstream 487526 51712790 ~ 51718231 (+) True LOC118964909
XM_021606787.2 mRNA downstream 658019 51883283 ~ 52006875 (+) False homer1b
XM_021606786.2 mRNA downstream 707508 51932772 ~ 52006875 (+) True homer1b
XM_021568351.2 mRNA downstream 1052430 52277694 ~ 52279409 (+) False LOC110493840
TU586543 other upstream 237337 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 424198 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1407685 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1772222 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1852294 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 1053229 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1426676 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2700678 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3044661 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3654435 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile