RNA id: XM_021606787.2


Basic Information

Item Value
RNA id XM_021606787.2
length 4937
RNA type mRNA
GC content 0.44
exon number 9
gene id homer1b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51883283 ~ 52006875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTTCGTCTATGGCAACATACATTgctaaggactgaggaggtgtccGGTTGAGAGAGCAGGGACCAGAGggcgtagaggagaggagagagctcaTGGGGTGGACAGTGGGTACTGTGCTTTACCGATCGACTGGACTTGTCAGGGGGCGTTTGGAGATCAAACAGCGAAAACAGCGAAAACAACGAAATAACATCTCTCCTGTTTTCATATACCCGACAATTGTCTGACGGACACATTTCTCTCTATCGAACTCTCTATGGCTCTTCCGGACGCCGCTTCAACACAGTAGTTTAGGTACTGGCAATGTGCATAAATCTCGAGTGAATAAACATTTGCCCTGCTATGTGTAGTTTCACACTGTTGTGAATGTGACAATGCAGTATTTGCCTTGGAATTTATTTCGGACGAGCTACGGTGAAGAGACAGAAACACGCCTATTATAGAGGGCAATCACCGCGCCAAACCAACAGAAACAACGTCCAGAATTTGGCCAGAGAACATTTTCCATCTGCTCATCTGCTGATTTGGTTTACCTACAATAACAATGGGGGAGCAGCCGATCTACAGCACGCGGGCCCATGCGTTCCAGATTGACCCCAACACCAAGAAGAACTGGGTGCCCACCAGTAAACACGCTGTCACTGTGTCCTACTTCTATGACAGCACCCGCAACGTTTACCGCATCATCAGCCTCGACGGCACCAAGGCGATAATCAACAGTACCATCAGCCCCAACATGACCTTCACAAAGACGTCTCAGAAGTTTGGCCAGTGGGCCGACAGCAGAGCTAACACTGTTTATGGCTTGGGCTTCTCTACTGAACACCACCTGACCAAgtttgCAGAGAAGTTTTCAGAGTATAAGGAGGCAGCACGTCAGGCCAAGGGAAAAAGTCAAGATGGAAAGATGGAACTAGCCACCTCTCCCTCTCAGGAGTCGCCAGCAGGTGAACTCTCTTCACCTCTGACTCCTGTGACTCCTCCCGCCATGGACAACATCAATGGGACAGATGACCCCTGTGACATCACACCCGATCCCCGTCCTGAACCGTCTCAGAACGCACTGGCTttcacacacagCCCCTCCATCAATAAGCACTGGGAGGCAGAGCTATCAGCTCTAAAGGGGAACAATGCTAAGCTAACAGCCACTCTGCTGGAGTCCACAGCTAACGTAAAACAGTGGAAACAACAACTGGCTGCCTACCAGGAGGAGGCCGAGAGACTCCACAAACGGGTGACTGAGCTAGAGTGCCAGAACTCGCAGACCCCTGTGATCAAATCCCAGAAGACGGAGCTAAACCAGACCATTGAGGAACTGGAAAGCACTCTGAAGGATAAAGAAGAGGAAATGGAGCGGTTGAAAGAGGAAGTGGAGAACGCTAACGAGCTGCTAGAGCAGAGACACTCCTTGACACAGAAACTACAGGAGACGGAGTTGCATGGGCGAGTGTTAGAGGAGCAGCTCCTGGGAGCTGAGCAGCGATTGGAAGAAAGTCAGGAAGAGCAGGAGAACTTCAGGAAGAGCCTAAGGACCCTACTGGAGATGCTGGACGGGAAGATATTTGAGCTGACAGAGCTCAGGGACAGCTTGGCCAAGCTCATAGAGGGCAGCTAGTTAATCACACACCACCTACCACTGGCCAACACACTGaattacacatagacacactgacCCCTACTGGCAGAGTCagagaactacacacacagatacaccacATGATTGACATGGCTCATATAGGTCCTATAGAGCTCACTGGCTCACAGCGCCCCTTAATGTTAGACATACAGAACAGCACTCTCACCTTCTGCCAGACCCATAGATCAATAATATACACTGCTGCCAGACCCACACAACAACATAACCCAGTGCTGATGACATAGAACAGCACCCCTTATTGGCTCCTAGGTGTATTGTAACTGCACCCTCTCCTTCCAAAATAACCTCCTGCAGCTGCTGCCACACTGCCCCCAGCTGTTGAACACACAGAACAGGTGCCCCATGCGGACTCTCTGAACATATGTCTGAGCAACGACATCCTTTGCAGACTGACAGAACAGCAACCCTTTCTGGTAGACTCACAGGAATACGGCTTTACAGTTAATTCATATACAGTATTCAGTATCTGGCCCATGCAGAAATAAAACCCACAAATCTAATGTTGCCAGCACCATATTACAACACGCTGAGCTATTGAAAATCACAGAACTACAGGAGAGCCCTAAATCAACCACTGAAACCCACAGAGCAGAGGCAggagtcatgtccaacacacaaacacacaccttggCCTAGGATTTACAAAGGCTGCTGTAAATTGGAGTACTGTTTACATTGATATTCAAGTCTTCATGAGTATGACTGAACCTTCGCAATATGAAAATAGTATAGTATACTATGACAAGAGAATCTTCCAGAAGCATTGGTCATGCTTTATTTAGAACTCCAGGTTGCCTAGCGCTTAAGAGCATtaggctagtaaccgaaaggttattGGTTAGAATCCCtgagccggcaaggtggaaatatctgctgttctgtccttgagcaaggcagttaagccccaacaacaactgctccctgggtGCAGATGAAGCCAATTAATGCAGCCCCAGCACCTCTCTGTTTCAGAGGTTGGGAAACTGACTCTTGACTGGGAAATTTCTTTATGGTTTATTCCTCACTTCTTATTCCACCAGCCCAACTGGTTGATTTCTCACTTCTTATTCCACCAGCCCAACCCCAGAGACCTGGggaatgttccctctaaactgcacGCACTTCCTCCAGGACTGCAGCGCAGAAGAAATGCAATGCTGTGCTCAGAGATGCAAGAGATTGAAATTCACTGAGTTCGCCCTATATAGATCAACGTCTTTCTTGTGATTCAATCAACATTATATCACACCCTTTTCAATGCAACAAAACAAATCAAACTCTGCAAGATTGAGTCTGTGATTGTGTTGTAGGCAAGGCCAGTGCACAACGGAGTAGAATTATATTGTCTGGGGTAGCCCACAAGCATCTTTCAATCACCAAGTGAATGCGCTTTTCAGATGATTTCAGATCAGAGTGCAGAGCCGTGCAAGTGCACATTTGTTGATATTCTTTGATAGTTAGTTATTAGACCAGTTACAGATAAGTATAAGTCAGCAATGGGGAGttactgcttcctacaagagcacaaaccTTGTAGGCTACATTTCAAGCACTTGTTGaaaggcaagtcagataagaagcTTTTGTCTTAATTAAAGGGGCAATGTATTTTGAGTCAGGCTtgaatatgcaaataagccaataGACAGAGGGGTAGCCTAAATTGTCTAATTCTCTGTATGGTAATAGTAATTCATTTTATTTAGTGAAATGGTTTCTTccatcatacaacacaatgcaatCACCTTTTTGGCCCATGGTGTTACAGACCAAGTAAAACATATTTGATTCATGTCAATGTAAAAACGTTTTTAAAAGCCTCATGAAGTGTAGGCCTGCATTGAACAAcacatataggctactgtagcgcATAGAAAACAAAAgctatttccatgtgaaaatgttatgggatttGCTCCATTGGTTGTGTTGGTAGGCCTACCATTAAGTTCAAATAGCCATaatagcctattggctactttctaaaactgtaagggtacagcctcagtgttcactgtaAATGCGCGCTGGAAATTGCACAGAATTCTCACAATGTTCAATTTTCAGCTCACACGACctaaaatttgctcagtgcccccCAAAATTTGAGGAAACATTGGACCTGGGGTTTGGAGAAACGTTTCAGAACGTTTCAAGCAGTTCAGAGTTAGCCCTGTTCATTTGaaagatgtttaaatgttttaaaatctTACACATTCTGAATCCACCCTTACTTCCACCTGAACAGAGAACTGACCTTATCTTCCTGCAAAGCTTGGGGCAATGTGTGTGTTACTGAATGGGTTCTGAACTCTACACTGCTtgagtgtgttggagtgtgtgtatgtgtctagagAGACACATGCACAAAGAGGCCTGTATACACACTGAGCAAAACCAGACATTCTCTGGATGACAGACACTTTAATCTAACAATCAGGTATTCAACTCAGTGGTCTGACTCAGACACCAAGACTGCACctcaaatgacactctattcctcATATAGTGCTTTACTTATTAAAAGATACATAGAAAGACATAGGTAGTTAGAAAGATAGATAgttgtatattttatttatgtaacTCTTCAATAAAAAAAGCATAGTATGACATTTATGCATCGGCACTTTAAAATTCAAGATTATAATATGGCTCAAAGCATAAATGCCATATGTGCAAGGAAAGAAGAAAAACTGTACCATTCATGTGTCTCTACTGCACTTTAAGGGGAATAAGGGGAAGAGATGCACCCTAAAACTCTTTGGTCTCAAAAACACTGGTTacacccacatgaaaaaatactatggTTTTCTATAGAATACTACCGTACTTACAATATAATTATGTAGTAaactgttgtatactgtagaatactagaTCATGTGTAGGACTTTACATACTATAGAactgaggaggctggtgggagggctATAGGAGGACGAGCTCATTTTAATGGCTGCaatggagtaaatggaacagagtcaaacatgtggtttccgtATGTTTGCTGTTTGAAACCATtttatttattccattccagccattgcaaTGAGCCGATCctcttatagctcctcccaccagcctcctctgctaaataatgttgtagtatactatagaatactatagtGTTATCTGCAAATAAAcactgtagtatatactatatagatCAGGGGTAGGCAAATCctgtcctcgagggcctgattggtgtcacactttttctccatccctagcaaacacagctgactaatcaaattgtattctaaactgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU588487 lncRNA upstream 9920 51873041 ~ 51873363 (+) True G518848
TU588428 lncRNA upstream 36411 51846313 ~ 51846872 (+) True G518795
TU588432 lncRNA upstream 37359 51845646 ~ 51845924 (+) True G518799
TU588430 lncRNA upstream 37791 51845201 ~ 51845492 (+) True G518797
TU588401 lncRNA upstream 144910 51735760 ~ 51738373 (+) True G518773
TU588769 lncRNA downstream 16483 52023358 ~ 52023625 (+) True G519109
TU588770 lncRNA downstream 16873 52023748 ~ 52024087 (+) True G519110
TU588778 lncRNA downstream 24286 52031161 ~ 52031392 (+) True G519118
TU588975 lncRNA downstream 144150 52151025 ~ 52151235 (+) True G519306
TU589044 lncRNA downstream 198904 52205779 ~ 52206004 (+) True G519374
XR_005052160.1 mRNA upstream 165052 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA upstream 165052 51712790 ~ 51718231 (+) True LOC118964909
XM_021606776.2 mRNA upstream 658019 51159434 ~ 51225264 (+) False LOC110526137
XM_036980406.1 mRNA upstream 658019 51159436 ~ 51225264 (+) True LOC110526137
XM_021606774.2 mRNA upstream 755139 51113988 ~ 51128144 (+) False znf608
XM_021568351.2 mRNA downstream 270819 52277694 ~ 52279409 (+) False LOC110493840
XM_021606788.2 mRNA downstream 378267 52385142 ~ 52390468 (+) False otpb
XM_021606790.2 mRNA downstream 378267 52385142 ~ 52390468 (+) True otpb
XM_021606791.2 mRNA downstream 517481 52524356 ~ 52645645 (+) False mapk8ip1b
XM_021606793.2 mRNA downstream 517483 52524358 ~ 52645645 (+) True mapk8ip1b
TU586543 other upstream 961186 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 1148047 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 2131534 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 2496071 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 2576143 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 271618 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 645065 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 1919067 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 2263050 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 2872824 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile