RNA id: XM_021606788.2


Basic Information

Item Value
RNA id XM_021606788.2
length 2491
RNA type mRNA
GC content 0.46
exon number 3
gene id otpb
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52385142 ~ 52390468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGTGCCTCCCCATCGCTCTAAAGGACATTATAATGCAAGGGTCCTCCTTTTTGAGCACAAATAGAATTTTCTTTCATTTGGAGGATATATAgcttacttaaaaaatatatatttaaagttGTAAGGTAGACCACATTTGTAAGGTGGACCATATTTCGCACTGGAGCGGTGCGCCATGCTCTCTCACACCGATCTCCTGGATGCTCGGCTCGGTGAGTTATCATCGCAAAACTCCGGTCTTCAACTATACTGGATGAAGGATGCTGCGGAGCTGCTGGGAAACCGAGACCCGATGAAGTGCCGGATGAGCGGCGGGGTGGCGGACCAGGGAAACATGGACCCTGGCCCGGACACCGTGGAGGGGGCCACCTTGCTGCCCGGGGATGAAATCCCCACAGGTGGAGCCAACCAGCCGGGCATGCCGGTAAACAGTAAGGACACTGagaaacagcagcagcaacagcagcataATTCTAGTCAGACTGCGAACCAGCAGAAACAGAAGCGGCATCGAACGCGCTTCACCCCAGCTCAGCTGAACGAACTGGAACGGAGCTTCGCCAAGACCCACTACCCAGACATCTTTATGCGTGAAGAGCTGGCGCTGAGGGTCGGCCTCACCGAATCCCGTGTGCAGGTGTGGTTCCAGAACCGCCGTGCCAAGTGGAAGAAGCGTAAGAAGACCACCAACGTGTTCCGCGCCCCTGGCACTCTGCTACCAACGCACGGCCTGCCTCAGTTCTCTGCTGCGGCTGCCATGGAGAACAGCCTGTGCTCCTTCCACGCCAACGACTCCCACTGGGCCACAGGGATGCACGGGGTGTCCCAGCTCCAGCTCCCCCCGGCCCTTGGCCGCCAGCAGGCGATGGCCCAGTCCCTTTCCCAGTGCAGCCTCGGGGCCGGCCCGCAGCACAACTCCATGGGCCTGTCCAACGGCCTCTCCTCCAATGGCCCAGGCCTGCAGTCCCACCTCTACCAGCCCCCGTTCCCCGGGATGCCCGCCTCCCTCTCCGGTCCAACGAACGTGTCAGGTTCGCCACAGCTGTGTAGCTCTCCGGACAGTGACATGTGGAGAGGGACAAGCATTGCCTCACTGCGACGCAAAGCGCTCGAGCACACAGTGTCCATGAGTTTCACTTAATGACGTTTGAAGATGACCCCCTTTGTTTAGCTTCTAGCTGTACCCCGCCATTTTAAGAAATACCTGTGTGAAGACTACTCAGgactcaaagtacttcatgagaATAACAATGAAATAGAATGGCCAGACTGGAGTCTGAGTTGTGTTCAGATGTCATAATAAAAAACCCAGATGAAGTTGGCTTGTAAATTTGGTGAAGTGGACGTGAGAAATAGGCTAATTTACCTGCGTTTCAGAATGTCTGTTTATCTTAATGTCCATTTTCCCAAAAATGATTATATCACCTACTCATaattatattgtaattatttgGCCCAAAATCCTTGTCATTTTCTGTTTTTCATTAGGTGTGGCTGTTGCACGCCATAGGAAAGTAAGATAACATGTCAGTGAATTTATTTGTTTTCTAAGCTGTTAAATGCTTTAAATTAAATTGGGAATCAAATTTCTAAATTCCACATGTACTGCATGTTTGAATGGGTCTGACGCTTGCGCAGTGAAGTGGATTTGACCCCTGAAATAGCCTATTTTTCTTCTGCTGCCTCGTTACCGAAATGCCCACTTGTTCACTTCTTATGGATTTAAGAGAATGGAAATGGTGTAAGGACTGTTATGTAGACTCTGACTCTTTTCCAATATCCACACTAGCATAGGCTACTATGAAGAAATGTACTGGTCATGCATTCTAAGTGGTATACATAGGCCTAgcaatttttttgttttacatctATGCTGGGAAGTGCATAGAGTGCATAAGATTGTCAGGGAGTGGTATGATTGGGAGGAGAAAACGGAACGtttgctgttattggcagagagacttggaactctctttcttatttgtCAATTACTCAATTTACCACCTGCTGATAAAAAAACTCCATTCTAACAAAACAGGCTGAAacttcaggcagtcttttcaaacagccctAACAATAATAGGTTATTTTAATAATTTTGCAGTATGATTGCAACCTAATAGTGTGGGAATATATCTAAAACACAGAggatcacgtttttgactgcactgggactTTAAGAAAGAAGAGTGaaaaagaaacaaacaaaccaaTTTCTACATAATCAGACTCATCTGCATGTGTTGGCCACGTGAAAAATGGGGGTATTAACATTTATAAGACAAGAAAAGGAACCTTTAAGTAACCTGTTCTAGGATGTTTTGAGTAGATAAAGCATTCTCGTACCCACTGGTCTGTTTGTGATATGTTTTAACTTATTGTTTGTGCTTTTCTTAAATGTTTGATCTTACACCAAATTGCATCACAATGTTTCCTTGAAAGGCTTATATTAATTTATTGTAAATGGACAAATAAAATCATTTTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589058 lncRNA upstream 167834 52216987 ~ 52217308 (+) True G519388
TU589049 lncRNA upstream 176152 52207796 ~ 52208990 (+) True G519379
TU589046 lncRNA upstream 178822 52206117 ~ 52206320 (+) True G519376
TU589044 lncRNA upstream 179138 52205779 ~ 52206004 (+) True G519374
TU588975 lncRNA upstream 233907 52151025 ~ 52151235 (+) True G519306
TU589236 lncRNA downstream 73581 52464049 ~ 52466190 (+) True G519564
TU589274 lncRNA downstream 257889 52648357 ~ 52649692 (+) True G519602
TU589347 lncRNA downstream 265736 52656204 ~ 52656459 (+) True G519675
TU589358 lncRNA downstream 279957 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA downstream 279957 52670425 ~ 52674545 (+) True G519685
XM_021568351.2 mRNA upstream 105733 52277694 ~ 52279409 (+) False LOC110493840
XM_021606787.2 mRNA upstream 378267 51883283 ~ 52006875 (+) False homer1b
XM_021606786.2 mRNA upstream 378267 51932772 ~ 52006875 (+) True homer1b
XR_005052160.1 mRNA upstream 666911 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA upstream 666911 51712790 ~ 51718231 (+) True LOC118964909
XM_021606791.2 mRNA downstream 133888 52524356 ~ 52645645 (+) False mapk8ip1b
XM_021606793.2 mRNA downstream 133890 52524358 ~ 52645645 (+) True mapk8ip1b
XM_036980424.1 mRNA downstream 164537 52555005 ~ 52558912 (+) False LOC110502468
XM_036980420.1 mRNA downstream 164555 52555023 ~ 52558912 (+) False LOC110502468
XM_036980422.1 mRNA downstream 164555 52555023 ~ 52558912 (+) False LOC110502468
TU589106 other upstream 106144 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 1463045 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 1649906 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 2633393 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 2997930 49386514 ~ 49387212 (+) False LOC118964898
TU589275 other downstream 261472 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 1535474 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1879457 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 2489231 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 2530004 54920472 ~ 54940873 (+) True LOC110526161

Expression Profile