RNA id: XM_021606791.2


Basic Information

Item Value
RNA id XM_021606791.2
length 2908
RNA type mRNA
GC content 0.53
exon number 13
gene id mapk8ip1b
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52524356 ~ 52645645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATGTGTTTTGGAGAGTTCTGTTCTCAGCACAGCCAAGCCCAGCTCTCCTACAATGATTTCTCTTTCTACTCCTGCTTGTGACACAGGGCAGCAGTTTCCTGCAGTGCACCTCTCGCATAGTAAATCTGATGTACATCCGGGACAGTGTAAACACTGATGACTCGAAAAAGGCTCTCagtgggagaggggtagagaggagtcGGTTATCTAATAGAACTTTGCGCTGGCTGCTCCTGCCGCTGCTAACGACGATACTCCTATATTCCCTTTCTGGGCTCAGGAACATTTAGGGCGACAGGAGGAAGGAATAACCAGAGCAGGGCTTTGAATCATATGCCTAACCTATCGACCCAGCTGAgcacacctcctctcctctgtgaatgCACTCACTTGCAGCATGGACTCCgcaggggaaagagaggaagggtggATGGAAGACCAGTGGGAGAAATGGGACTAAACAGGGCAATTGATGCTTTGGCAGGACAAATCCCTCTTTCCCGATTGGTGTGGAGgTTGACCCATGACATCAGCCTGAATGAGTTTGAAGATGACGACTTGTCTGAGATCACTGAGATCACAGATGAGTGTGGGATGAGTCTCAACTACATGGGCCTAGAGATTAAGGGCTGTGTGAGGCAGGGGACCAATAGTGGGGTGGGGAAGGAGGAGCTGGGTGCTGTCGGCCAGCTCCAGGCCGAGATACTCCATTTGGATCTGATCGACGGGGCCGATGGTTACCGCGATGACAAGGAGTCATCTAAGCCATCTTCCACAGCACCCCTGCCAGTAACCGAGGACCACCCTCTAGTAACCATGAATATATACCGGCCAAAGAGACCCACGACCCTTAACCTTTTCCCCATGGTGCCACGCACTCAGGACACATTAAACAACAACTCATTTGGTAAGAAGTACAGCTGGCAGGAGAAGGTCTCGCTCTCATCCTCCCCCCTCAAAACAGgCGGGCTGATCTCTCCCCATGAGCACAGCTGTCTAAGTGACGAGGACAAGCTGCAGCACGGAGGTGGGACGCAGACCAAGGACCGCGGCACATCCACTGACACTCCCTGCAGATACAAACACACCTCTGGACACACCGAGAGCTCCACAGCGGGGACACGCTCCAAACTGCCGGAGAAGCCCCCAGCACCCCCGCCTCCCCAAAACTACACACTCGCACCTCTGGGCCCCCcagggacacacagagagaagatcCGCTATCACACAGATGTACGCCTAGAACCCACCGAGGAGATCTATCTGACTCCAGTGCACCGTTCCGAGCAGGACCACCCATTCCTGTCCCAGCAGCCAGAGCACGGACGCATGTCAATCAGCTCTGACAACGAGGGCCCGCCCCCTTACCAGCCTCTGCCCGACCGGACCAACCCTTCCATTTGTGAGGAGGACGAGGTTTACATGCCCCCTCCCTCCTACGCCTCCTATGTGGAGGCTCTCTTCACCCCTCCCTCTACCGCCCCCCCCATGGAACCCCCAGGCTTAGCCCTGAACCTCGGCCTGAGGGAAGGAGGAGCAGGGGCGATGGTGAGAGCAGGGGCAGGGGTGGAGTATGTAGATGCCCAAGATGAGACATTTGGGGTAGAGGGTGAGGATGAGAGGGTAAGGGTTGTGGGAGGCAGGCAGTATTTGGGACGTGGTGGCTGTGGTGCCCCCACGAGTACTTTGATGAGCTCGGAAGCGAGTGGTCTGTCTTACGACTCTGTGAAGTACACACTCGTTGTGGACGAGCATGCGCAGCTCGAACTGGTAAGTCTGAGGCAGTGTTACCAATGTTACAGCGACGACAGCAACTCTGCGACCGTCTACGACAACTGCGTCTCGTCTCCGTATGAGTCGGCCATAGGGGAGAAGtataaggaggaagaggaagaagagaaagaggatgaggaggatgaggaggaggaggaggagagagtgagaagggtGAGGAGAGAAGCCCCCGCCTGTCTGTCAGAGGACTCCACCCCGGAGGCGAACTTGCACTTCTCTAAGAAGTTCCTCAACATCTTCATGAACGGACGGTCACGATCATCCAGTGCAGAGCCGTTTGGTTTGTTCTCCTGCCTCATAAATGGGGAAGAGAGGGAACAGAGTCACAGAGCCGTCTACAGGTTTGTCCCTCGCCATGATGATGAGCTGGAGTTGGAGGTGGATGACCCTGTACTGGTGGAGATACAAGCAGAGGATTACTGGTACGAAGGCTATAACATGCGTACAGGCATCTGCGGCATCTTCCCTGCTTACTACGCCATAGAGGTCGCCAAGGAGCCAGAGAGCTTCAAAGtGAAGAGCAGTGACTGGGTAGACAGGTACCACATGAAATTCCTGGGCTCGGTCCAAGTACCCTACCACAAAGGCAACGATGTTCTGTGTGCAGCTATGCAGAAGATTGCCACCAATAGGAGGATGACAGTGCAGTATAACCCACCTTCGTCTTGTATCCTTGAGATCAACGTGAAAGGCGTGAAGCTCCTAGTCCAGGATGACTACTATGCCTCTGACAAAAGTAACCAGTGCAGCCACTTCTTCCAGTTGAAGAATGTTTCCTTCTGTGGATATCACCCTAAGAACAGCAAGTACTTTGGCTTCATCACAAAACACCCAGCTGACCAGAGATTTGCCTGTCATGTGTTTGTGTCTGAAGATTCTACTAAACCCCTGGCAGAGTCTGTTGGGAAAGCCTTCCAGTTGTACTATAAGGAATTTGTAGATTGCTCCTGTCCGACAGAGGATATTTACCTGGAATAGCACCCACCCCGCCTTCCACCACAACCCTGTACATTACAGTGTATCATAACATAATGTTGCATGACAGAGAAAACAATTCTAACAAATGTGAACTAATAAATTTGACAaaaagatgaaggagagagagaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589236 lncRNA upstream 58166 52464049 ~ 52466190 (+) True G519564
TU589058 lncRNA upstream 307048 52216987 ~ 52217308 (+) True G519388
TU589049 lncRNA upstream 315366 52207796 ~ 52208990 (+) True G519379
TU589046 lncRNA upstream 318036 52206117 ~ 52206320 (+) True G519376
TU589044 lncRNA upstream 318352 52205779 ~ 52206004 (+) True G519374
TU589274 lncRNA downstream 2712 52648357 ~ 52649692 (+) True G519602
TU589347 lncRNA downstream 10559 52656204 ~ 52656459 (+) True G519675
TU589358 lncRNA downstream 24780 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA downstream 24780 52670425 ~ 52674545 (+) True G519685
TU589976 lncRNA downstream 259791 52905436 ~ 52905657 (+) True G520259
XM_021606788.2 mRNA upstream 133888 52385142 ~ 52390468 (+) False otpb
XM_021606790.2 mRNA upstream 133888 52385142 ~ 52390468 (+) True otpb
XM_021568351.2 mRNA upstream 244947 52277694 ~ 52279409 (+) False LOC110493840
XM_021606787.2 mRNA upstream 517481 51883283 ~ 52006875 (+) False homer1b
XM_021606786.2 mRNA upstream 517481 51932772 ~ 52006875 (+) True homer1b
XR_005052417.1 mRNA downstream 420382 53066027 ~ 53067743 (+) True LOC118965081
XM_036980427.1 mRNA downstream 465495 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 465611 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 465639 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 513266 53158911 ~ 53159015 (+) True LOC118965122
TU589106 other upstream 245358 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 1602259 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 1789120 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 2772607 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 3137144 49386514 ~ 49387212 (+) False LOC118964898
TU589275 other downstream 6295 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 1280297 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1624280 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 2234054 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 2274827 54920472 ~ 54940873 (+) True LOC110526161

Expression Profile