RNA id: XM_036980424.1


Basic Information

Item Value
RNA id XM_036980424.1
length 2532
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110502468
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52555005 ~ 52558912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACAAAACTAAAAGAATGGAAAGACAGGCAAATGAAGATCTTACGGGATGCGGGAAAACCCTATACAAATCGTAAGGGTCAAGAAAAAACTGGGAAAAGCTGTCCAAAAGAGCATGAGGTGAAACGGAGACGTAAACCTGAGGATACAAAGGAGAACAAACGACGGAAACAAACCATCAAATACCATGTACAGCAAGCAGGCCAGAGATTGAATGTGTGCAAGGTTACTTTCATGTCTGTGTTCCAGCTAACCAACAGCCGTCTTCAGGCCACATCGGATACATGCTACAGTGAAAGAGGGCATCAAGGAGCACATTCTATCTTTCCCAAGAACCCAGAACCACTACTCACGGATGAAGGGGGATGTACACAGAGAATATCTCAGCCCTGATCTGAATTTGTTGCGAATGTACCGACTCTACAAAGAGAATAATACCACATCATCTGCAAAATTCTGGGTTTATAGGGACATTTTCAAACAGCAGAGTCTCAATTTCGGCCAATCCAGGAGTGACACCTGTGGCAAATGTGACGCATTCTTCACTAAGATGTCAGCAGCAACAtctgaagaggagaagaggaagattgCAGTTGAAAGTGAGTTACACCATCGAAAAGCCGAAAAGGCCTACACACAGCTTCAAAGTGACACTGAGTGGGCTAAAGCCAATGCTGACTGCCATGTCATTTCTGTGGATCTACAGGGGGTGATGTACACCCCTAATCTGACCCACTCCAATGTCTACTACCAGCGGCAGCTGTCAAATTTTAACTTTTGCATCCAGGAACTTGGAAAAGAAGATCCTGCATACATGTGTGTTTGGCATGAGGGGATTGCACACCGAGGGTCCATTGAGGTGGCAAGCTGCATAATGAAGTGGGTGAAGACAAAATTCACGCCACTCACCAAACCAGAGGTGCGCAAGTTGGTCATATTCAGTGACAGATGCTGTGGGCAGAATAACAACTGGCGGATGCTCAATCTGATGTCGATGCTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATTCTTTTCTTCCTTGTGATCGATCTTTTGCCACCATCGAGAAGAGGCGCAAGGTGTCAGTCCTTCATACACCTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGGTGATGAGGATGCAATGTGAAGACTTCAGGCACCTCCCAGATTCTGTCCTCAAGCGACCAGCTGGACTACAGATCACCTCAGTGAGGTGGTTAAAAGTCACAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCACAGTCTATTTGAGGGATGGAAGTCATGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCGAGCCACTACCCTAGAGCATATGAGAGTCCTCTGCCCATCAAAAAAAACAAGTACCAAGATCTGATGACCATGCTCAACTACTTGCCAGCTGCTGCACGCTCTTTTTATGAATCACTGCAGAGTGAATAATTTGTTGTTAAAGCAAGCTACATAATTAAACGTTTTTTCTGTGAGTTTATGATCCCCTGAAcctgtatactgtagtatgttGAATCTGTATACATTTCAGAAGACATGTCACCCCTATTGTAGGAAATTAAATGTATCGTAGGTGTTTTCTATGTGAATCAATTTGTGTATGATTTGAACCAGCACAATATATTGAATTAATTTAATTTTAAGATGTTGTTCCTAGTGTAGAAAATGTTATGTACAATGTGTTCTGTTGATAATTATTTTGTTTGATCATTTGAACCTTTTTTAATCTGAATTAATTAAAAACAAATAAgtcatcacatacagtatgtgagtaTTCATTTGATCTTGATTCCCTTTTTTTATTCATTACaatatacactgtctctctgtcaccacATTTAGCATTAACTCTAAGCAGTTAATACTTATTTACTGCTGTCACCTCAGTGCAGAAGGACATTTCTTGCCTTTAGCATGGGTTTAACGCAATTCACAACTTAATTGCTGATCATAGTGTTAAACACAAAGAGAATGGTTTTCTGAACGTTTTGTAATATTGACCTTCGGGACCTGCATAATGGACATGCATATTGGCACATCACATTTATCCCTATTTGATATTTACAAGTTGTGCTTGTTTTGATTGAATTAATTTAATTGTATTCTATTTTGGTAGTTCTATGGTATGTTCACTTTGAGGGCTTCATTTTAAATGAGACTAAGATTTCATGACTCAACTTTTAAGAAAAGTCATCATTGCTAAAGTTGATAGACCACCTTTAAATGAACCTCCATACAAATGAATTAACTACATATTGCATTTAAGTTATTTACATGAAGGGCATATGTACTTGAAAGTACTTAAAACATCATATCAGGTGTTAAAAAAGGACATCTTACAAGAGTCATGCAAAATGTcacatatactgttcttccacaaacggaaatcatcactggagatatactgttcttccacattcTAAAAATTAAAACGGCAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589236 lncRNA upstream 88815 52464049 ~ 52466190 (+) True G519564
TU589058 lncRNA upstream 337697 52216987 ~ 52217308 (+) True G519388
TU589049 lncRNA upstream 346015 52207796 ~ 52208990 (+) True G519379
TU589046 lncRNA upstream 348685 52206117 ~ 52206320 (+) True G519376
TU589044 lncRNA upstream 349001 52205779 ~ 52206004 (+) True G519374
TU589274 lncRNA downstream 89445 52648357 ~ 52649692 (+) True G519602
TU589347 lncRNA downstream 97292 52656204 ~ 52656459 (+) True G519675
TU589358 lncRNA downstream 111513 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA downstream 111513 52670425 ~ 52674545 (+) True G519685
TU589976 lncRNA downstream 346524 52905436 ~ 52905657 (+) True G520259
XM_021606788.2 mRNA upstream 164537 52385142 ~ 52390468 (+) False otpb
XM_021606790.2 mRNA upstream 164537 52385142 ~ 52390468 (+) True otpb
XM_021568351.2 mRNA upstream 275596 52277694 ~ 52279409 (+) False LOC110493840
XM_021606787.2 mRNA upstream 548130 51883283 ~ 52006875 (+) False homer1b
XR_005052417.1 mRNA downstream 507115 53066027 ~ 53067743 (+) True LOC118965081
XM_036980427.1 mRNA downstream 552228 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 552344 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 552372 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 599999 53158911 ~ 53159015 (+) True LOC118965122
TU589106 other upstream 276007 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 1632908 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 1819769 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 2803256 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 3167793 49386514 ~ 49387212 (+) False LOC118964898
TU589275 other downstream 93028 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 1367030 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1711013 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 2320787 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 2361560 54920472 ~ 54940873 (+) True LOC110526161

Expression Profile