RNA id: XR_005052417.1


Basic Information

Item Value
RNA id XR_005052417.1
length 1442
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118965081
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53066027 ~ 53067743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAACCAAGCAACAACATCTCCAGGAACATCAGTGCTAAGGGCTTGgtgagaccatggctTGTATGTTACTAATCATCAATTCATTGATGGTTAAATTCATAAATGTGCCAACAACCCCCAAGTCTTGAATGACCCACCAGTCTTGTCTCCCACTACCCACCAAGCAATAGTGTCTCCAGGAACATTGGTATGAAACTTTTGTTCATACAGAATGGCAGACATTATGCTCGCTACAAGTATTTTACCCTTCCCTGATGAAACGTGATGAATTAATATACAATTACATTGAGTTAGAATCAATACTAGGAAAACATTACCACCAAATAAGTCAGTGTCACAACTGGATGTGGTgttgtgctgtaattagtgtaaCGTGTCATGCTAATGTTACCATCCTACTATGACTTTATGCTTCATAGTCCACCAATATCTCATAAGCCATTGTTACTTGACTGACCACGCTAGTTATTCATTCAGTCTTTCTGGTGGGTCGTTCACACTATGTAGGAATCAATGCGGTCTATGGGCAGGCAATGTGCTGAACAGGCAAACATGGCTAACTATTTTGGTCGACTACCAACAAAATAATTATAGAATCACAAAACATAACAGAAAATGCATATAGCATTTCTTACCTATCTTTCAGTGTTGGGGCTTGCACAATCACAACTTGTACAGCCTCAGGTTCCCTCGAAATCAGACTGTCTCCTCCAGTATCTCCCTGACAAATTCATGTTTGTGTGATGTTACTGTACCAAATTGTATAGCGGGGTGAAATGTTGTCGaccacctagctagctagtattaTAATCTGCAAATGAAACACACTATCATGTCAACAATCTGCATATCtagctttagctagctaacgttagctggttgAAATAAAGGGATTGGGCATCTTGTGAGGTTTATGCAATTTAGCTACATAATGCTGTTAGATTCCATTGGGTACAAAACAGTCAATGCAGAAGATGTTAGCTAGCGAAGTAGCCTTGTTAGCTAGCTTGAACACTGAACACACTAAGGTTAGCAGCTAACTTAGCTAGCAGGCTAAAAACGCAACCCAAAACATACCTAGTTAGGGTGGACACATGACATTTTTAACAatgctttttttaaataaaacgtAGTTAATTGCATCCGCggtggagcccagtttcataatattaCCATATATCCCAGCTGCCTGTCATAGTTTTGAAGTAATCATgaaaaaaacaggccttattttaggTCATTTTCACactgccagctcctattagttctattgacCAATgtggcaccaactcgccttccGAACGTTCTAATCCCATTTTGTTGTACTATGTCACAATGGGCAGCTTCGCTATAGTTGGCAATGGAGACCTGCTCACGTTGTTTATAgttaaaatgtaaacaacaaaaaatgactaATGGAACTCTGAGGTCGTCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589977 lncRNA upstream 160096 52905722 ~ 52905931 (+) True G520260
TU589976 lncRNA upstream 160370 52905436 ~ 52905657 (+) True G520259
TU589358 lncRNA upstream 391482 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA upstream 391482 52670425 ~ 52674545 (+) True G519685
TU589347 lncRNA upstream 409568 52656204 ~ 52656459 (+) True G519675
TU590234 lncRNA downstream 20516 53088259 ~ 53088587 (+) True G520505
TU590236 lncRNA downstream 21623 53089366 ~ 53089634 (+) True G520507
TU590237 lncRNA downstream 23039 53090782 ~ 53091037 (+) True G520508
TU590238 lncRNA downstream 23972 53091715 ~ 53092164 (+) True G520509
TU590262 lncRNA downstream 41396 53109139 ~ 53109367 (+) True G520531
XM_021606791.2 mRNA upstream 420382 52524356 ~ 52645645 (+) False mapk8ip1b
XM_021606793.2 mRNA upstream 420382 52524358 ~ 52645645 (+) True mapk8ip1b
XM_036980424.1 mRNA upstream 507115 52555005 ~ 52558912 (+) False LOC110502468
XM_036980420.1 mRNA upstream 507115 52555023 ~ 52558912 (+) False LOC110502468
XM_036980422.1 mRNA upstream 507115 52555023 ~ 52558912 (+) False LOC110502468
XM_036980427.1 mRNA downstream 43397 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 43513 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 43541 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 91168 53158911 ~ 53159015 (+) True LOC118965122
XR_005052452.1 mRNA downstream 95352 53163095 ~ 53163203 (+) True LOC118965121
TU589275 other upstream 410730 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 787029 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2143930 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2330791 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3314278 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 858199 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1202182 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1811956 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1852729 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2416506 55484249 ~ 55484607 (+) True G523529

Expression Profile