RNA id: XM_036980428.1


Basic Information

Item Value
RNA id XM_036980428.1
length 6410
RNA type mRNA
GC content 0.54
exon number 43
gene id LOC110526152
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53111140 ~ 53202399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTTGTCTGCACTGTGGTGGGTGTTCAGGCAGGGTAGCTGTCGTGcagtaaaataatattttttttttctcccccattGCCTTTCATTTCGCAAACGATTAGCTACATATTGCAGAGACGAGTGAGGTTATCATTTTGAAGTGAATCCACACAAATCATCATGGGAGACGACAGTGACTGGATGAAGTTACCAGTCGATCAGAAATGTGAACACAAGGTATGGAAAGCCAGGCTGAATGGGTATGAAGAGGCCCTGAAGCTCTTCCAGAGGATTGATGATACGAGTCCAGAATGGGCCAAGTACCAGGGAATCATCAAGAAGTTTGTGACGGACTCAAACTCAGTGGCCCAGCTCAAAGGACTGGAGGCTGTTCTGGCTTATGTAGAGAATGCACACGTGGCTTCTAGGACGGTGGGTGAGGTGTTGTCAGGTGTGGTGTGTAAGGTATTCAACCAGCCTAAGGCGCGGGCCAAAGAGCTGGCCTCAGACATCTGCCTCATGTACATAGAGATTGAGAAAGCCGACATTGTACAGGAGGAGCTCATCAAAGGATTAGAGAACAAGAACCCTAAAGTAGTCGTCGCTTGTGTGGAGACCATACGCAGGGCACTCTGTGAATTTGGATCCAAGACTGTGACCCTAAAGCCCATAATTAAAGTGTTGCCAAAGCTCTTTGAGTCCAGAGAAAAGGCAGTCCGACATGAGGCCAAACTGCTGGCTGTGGAGGTCTACAGGTGGATCAGGGACTCACTACGACCTCCTCTTCAAAACATCAACTCTGTACAGttgaaggagctggaggaggagtgGGTGAAGGTGCCGTCGTCGGCCCCCAGACAAAGTCGTTTCCTACGCTCCCAGCAGGACCTGAGGACCAAGTTCGAGGAACAGCAGGCCGTGGCAGGGTCCGACGGAGACTGTGAGGACGTAGCAGACTCTGCTCCTCAGGTGGACCCCTATGAGCTTCAGGACCCAGTGGAGATACTCTCCAAACTGCCCAAAGACTTCTACGTGAAGATTGAGGCAAAGAAATGGCAAGAGAGGAAAGAGGCCCTGGAGGCCTTGGCGATGCTGGCTAAACACCCCAAACTGGATAATGGCGACTATGGCGATGTGGTTCGAGCACTCAAAAGGGTCATTGGTAAAGACACCAATGTTATTCTGGTGTCGCTCGCTGCAAAATGCCTGGCTGGATTGGCCTTCGGACTCAGGAAGAACTTTGGGACGTATGCAGGCAATGTGGTGCCAACTATTTTGGACAAATTTAAGGAGAAGAAACCTGCTGTGGTCCAGTCCCTGCAAGAGGCCATCGACGCAGTCTTCCTGACGACCACTCTCCAGAACCTGAGCGAGGACATGCTGGCTGTGATGGACAACAAGAACCCGTCCATCAAGCAGCAGGCCTCTCTGTTCCTGACCAGGAGTATCTGTCTTTCTACCCCTTCCACCCTGCCCAAGAGCCTGCTCAAACCCCTCTGTGCTGCTCTGCTCAAGCAAGTGAATGACCCTGCTCCAGAGGTGAGAGATGCTGCGATCATGGCTCTAGGCACGGCCATGAAGGTGGCGGGAGAGAAAGCGGTTAACCCCTTCCTAGCAGACCTCGACAAACTCAAGGTTGAcaagATTAAAGCGATTGCGTCCAATGTGGAGCTGGCAGGaggaaagaagggaggaggagtggagaaagggaaacctggcaccaagGCACAGTCTGAGGCCCCAGCCAAACCCGCAGGGGCCCCCCAAAATGCCCCTTTGTATAAGGATGTTGGCGTTGCTAAGAAAGGGAAGCCTGGGGCAGAAGGTGGAGCCAAGAGTAAGAAGCCTGCTGAAACAAAAGAGATCGTGGAGACTGAGCTCTCGGTGGAGGTGTGTGACGAGCTGGCTGCAGCGGTGTTGCCTGCCTCCTGTGTAAAGATGCTGGACAGCTCcaactggaaggagaggctggCCAGCATGGAGGAATTTTACCAGGTTGCGGAGCAGATGGACATCGGTGCGATGCCATGTCAGGCTCTGGTCCGCATGCTGGCCAAGAAACCTGGCTGGAAGGAGACTAACTTCCAGGTGTTGCAGCTAAAGCTCCAGGTGGTGGCAGTGGTGGCCCAGAGGGGCAGGTTCTCTAAGACGTCTGCCTCTGTGGTGCTGGATGCCCTGGTGGAGAAGATGGGAGACGTCAAGTGTGGAGGGAAGGCCAAGGATGCCCTAACGGCCATAGGAGAGGcctgctctctctcctggatTGCTGAACAGGTTGTGTCATTGGCCTTTGCCCAGAAGAACCCGAAAAACCAAGCTGAGACACTGAACTGGCTGGCCAATGCCATGAAGGAATTTGGCTTCACAGGAATCAATGTGAAAGCTTTTATCAACCATGTCAAGACTGCTTTGGGTGCTTCCAATCCTGCTATACGAGCAGCAGCCATCTCTCTGCTGGGGGTGATGTACCTGTACATGGGCGCCTCACTGCGTATGTTCTTTGAGGACGAGAAGGCAGCACTGCTCGCTCAAATCGACGCAGAGTTTGAGAAGATGCAGGGCCAGACTCCTCCTGCCCCCACTAGAGGCGCCATCAAAAGGACAGGGGggcaggaggagggagaagaggccaAGGAAGAAGGGGTTGCAGGTGACATCATGGACCTCCTGCCTCGCACTGACATCAGTGATAAGATCACAGAGGACATGGTGTCGAAGGTGGGCGATAAGAACTGGACTATCCGTAAGGAGGGTTTGAATGAGGTGGCTGCAGTTCTTTCTGAGGCCAAGTTCATCAAGCCCAGCTTGGGAGACCTGCCCATCACACTGAAGGGACGCCTCAGTGACTCCAACAAGATCCTGGTCCAGCAGACCCTGTCGATCATGCAGCAGATGGCCACTGCCATGGGCCCTGCCCTCAAACAGCATGTCAAGACCCTGGGCATACCAGTCATCACTGTGCTGGGGGATATTAAGAACACAGTTCGTGCTGCGGCCATGGCCACCCTGAACtcctgggtggagcagactggtatGAAGGAGTGGCTGGAAGGAGAAGAGCTGTCTGAAGAGCTGAAGAGGGAGAATCCTTTCCTCAGACAGGAGGTGCTTGGCTGGCTGGCAGTGCATCTCCCCACCATGCGCTCAGTGCCCTCCGATCTCATGCTGTGTGTGCCCCCCCTGTTCGGCTGCCTGGAGGACCGCAACGTTGACGTAAGGAAGCGAGCCCAGGATGTCCTGCCTGTCTTCATGATGCACCTGGGCTTCGACAAGATGAACAAGGCCACAGGCAAACTGAAGCCTGCCTCTAAGGACCAAGTGGTTGCCATGCTGGACAAGGCCAGGGATGTGATGCCTGCTAAATCAGCTGGTCCTGCTAAAGCTGCCCCCACCAAGCCTGTATCCAGCGTCCACCCGGCCAAAGCCCTTGCAGCTTTGAGCAAAACCCAGGCTCCCATTGAAGAATATGCAGTTGCCGACCCAAAGAAAGCCAAGCCAGGGGCACTCCCGGCCAAAGGAAAGgCTGCTGCTGGGAAGAAGCCCTTGGGTAAGGGTAAAGAAGAGGAGGACAAGTCTGGTCCCATCTTCACCATGGTGCCCAACGGCAAGGATCTACGTGTCAAAGATGAGAAGAGCTTGAAGACGTTAAAGTGGAACTTTGGGTCTCCTCGCGATGAGTATGTGGAGCAGCTTAAAGTTCAGATGGCTCCCTGTGTGGCCAAGTGGCTTCAGGAGGAACTCTTCCACCATGACTTCCAGCACCACATCAAGGCCATCAACTCCATGATAGAGTGTCTGGAGGAAGAACACGAGGCAATGGTGGCCTGCCTAGACCTGGTCCTGAAGTGGTACACGCTGCGCTTCTTTGACACAAACACCAGTGTGCTGATGAAGGCCCTGGAGTACCTGAAGCTCCTTTTCCTCAGCCTCAGCAAGCACAACTACCACCTCAGTGAACAGGAGGCCAACTCCTTCATCCCCTACCTCGTCCTCAAGGTGGGGGAGTCTAAAGACGTGGTTAGGAAGGACGTGCGAGCCATCATGGGCATGCTGTGTAAGGTCTACCCTGCCAGCAGGATGTTCCCTTTTCTCATGGAGGGAACCAAATCCAAGAACTCCAAACAGAGAGCCGAGTGCTTGGAGGAGCTGGGTTGTCTCATTGGATTTTACGGCATGTCTGTCTGCCAGCCGACTGCCGCCAAGTCCCTGAAAGAGATTGCTGTACACATTGGAGACCGAGACACGTCCGTCCGCAACACAGCCCTCAATACCGTGGTGACGGTCTACAACGTCTGCGGCGAGCAAGTCTACAAACTCATCGGCCATCTGTCGGAGAAGGACATGAGCATGTTGGAGGAGAGGATCAAACGCTCAGCGAAGAAAACCCTAGCCTCCACAGCCCCTACCCCCAAACAGGGGGAAGAGAAGGCTCTGCCCACTCACCCCAATGCCAGCCTCCCACAGAAGCCCTCCAACAGAGCGCAACCCCCTATAAAACTCAGTCAGATCCGTCTGAATGCTCTGGGCCAGTCCCAGCAGGCTGAGCCCTCCCATGTTTGCTCTGTTGGGGAGTTCCATCTGGACCTGGATCTGCTGGAGCAGCTGGAGAGTGACCAAACGTCTGTTGTGCTGCCTGATCTGGTTAAACACAAACTAGGGGACTTGCTAGACCCTGTTATCATCCCAGAGCCCAAGCTTCGCCCAGTTCCCACCCACTTTGATGAGCTGCACGCAGGTCCCTCCTCCACCATCAACCTGGTTATCTCCCAGGTGGCCTCTGGTGATATTAACACTAGCATGAAGGCCCttgcacagATAGACGAGGTGCTTCGTCAGGAAAGCATTGCGGAGGTGATGGTTGGTCACACAGATCAGTTCCTCATCGCTACCTCCCTCCAGCTCCGTCTGGCCCACAGCACACACATGGCTGACACACGCCTTCCCAGGGAGGACATCTTCAAACTTTACAGCTGTGCTATTGGAAACATGCTTACATTGTTTGGTGTGGCGCGGCTGGCAAGGGAAGCCTCCATGGGGGTGCTTAAGGACCTTGTCCAGGGTCTGGTGACAGTTCTGCTGGACCCCCGGATAGAGGAGAGCCAGGAGGGACAGCAGCTCATCCGCTCTGTTAACATGCTGCTGAGACGACTCTTCGAGACCTCAGACCAGACCAACATACTCAGTGCTCTTCTGGTGCTACTGCAGGACAGCCTCCTGTCCTCTGCTGGCTCCCCCAAATTCTCTGAACTCATCATGAAGtgtctaTGGCGTATGATCAAGTTCCTACCAGACACCATAAGCAGTCTTACTCTGGACAAGATCCTGCTGGATGTGCACAACTTCATGAAGCTCTTCCCCAAAGACCGCCTGCGGAAGCTCAAGACTGACATGCCCCACCGCACGCTCCAAACTCTGCTACACACACTCTGCCGCCTGGCAGGGCCCACGATCCTGGATCACCTGTCACTGATTGAGGACAAGACTGAGTCTGAATTGGAGGCTCATCTGAAGAGGGTTGTCAAGTCTCccaagacaaacacagagactgcACACATGGTTCCCAAATCAAAAGATGCAGAGGTGTTGGGGGAGATCTTCAAAAAGATCTCTTCCAAGGAGAACAGCAAAGAGGGTGTGTCTAAGCTGTGGGAGTTTAAGCAGAGACACCCTGAGGTGGACCTTGCCTCCCACCTGAAGAAGCTCCCACAGACATTTCAGACCTTTGTAGAGCATAGCCTGAACACACtctgcacagagagaggagacaaggcCAGGACACCATACCCcaccacaggtacacacaacaGAGAGGGTGTGGGTCTGGAGCCTACTCCTGGCAGAGACGAGCTCAGACCCTCAGTCTACCAGGAGCGACTCAAGATACTCCGACAGCTGCATGGCCTGGAGAACAACAACAAGCCTCAGCAGAGGGAGGGTGAGGACGAGCGCGCCACTCTTCTCTCCAAGCCCCCCGTGGCCCCCTCTATGGATGTGCTCCAGAGCAAGATGTCCCAGATCCTCCACAACCGCCAATCACAAGACCAGCGCCGCCCACAGAGCCCCACCCGGCCCGCTGACTCTGGCTCCACAGGCAACCTAGCTGACCTCATGAAGAGACTACAGAAGATCAAGGGCAACCAACAATAaactagcctgagtgccagtctgtttctgttcttgccaactccttatgaaattgtcatgccaaacatcacgtttggcttgacaatgacaaaATAGTTCAATAAGGGTGCAATTGTGATGTCTGCTCTCTTAAGGGATGCTGGTGGAGTAAAGGACAAATGCACAAATGGAGTGTTTGAGAGGTGTATGCAATCCGTCATTGCCAATGAAGGTGAGGTGTGTGGTGAATGTTTGTATGGATTATGTTTTGTGTTTTATAAATAAAGTTTGACAAATATCTTGAA

Function

GO: NA

KEGG:

id description
K16803 CKAP5; cytoskeleton-associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590262 lncRNA upstream 1917 53109139 ~ 53109367 (+) True G520531
TU590238 lncRNA upstream 19120 53091715 ~ 53092164 (+) True G520509
TU590237 lncRNA upstream 20247 53090782 ~ 53091037 (+) True G520508
TU590236 lncRNA upstream 21650 53089366 ~ 53089634 (+) True G520507
TU590234 lncRNA upstream 22697 53088259 ~ 53088587 (+) True G520505
TU590492 lncRNA downstream 78619 53281018 ~ 53281230 (+) True G520753
TU590499 lncRNA downstream 84020 53286419 ~ 53286990 (+) True G520760
TU590700 lncRNA downstream 354990 53557389 ~ 53557596 (+) True G520958
TU590701 lncRNA downstream 355477 53557876 ~ 53558084 (+) True G520959
TU590718 lncRNA downstream 371953 53574352 ~ 53574555 (+) True G520976
XR_005052417.1 mRNA upstream 43541 53066027 ~ 53067743 (+) True LOC118965081
XM_036980422.1 mRNA upstream 552372 52555023 ~ 52558912 (+) False LOC110502468
XM_021606800.2 mRNA downstream 152379 53354778 ~ 53759596 (+) True LOC110526153
XM_036980433.1 mRNA downstream 817713 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 817716 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 880346 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 880365 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 455987 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 832286 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2189187 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2376048 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3359535 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 723543 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1067526 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1677300 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1718073 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2281850 55484249 ~ 55484607 (+) True G523529

Expression Profile