RNA id: XR_005052453.1


Basic Information

Item Value
RNA id XR_005052453.1
length 105
RNA type mRNA
GC content 0.58
exon number 1
gene id LOC118965122
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53158911 ~ 53159015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTGAGTGATGCGTTGCACCCTTAGTCAGGTGGCTGGTAGCAGGGGCACAGGTGTCCCGTACCTCTGGGGACACCAATGTGCACATGGGCTgtctggctcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590291 lncRNA upstream 4297 53145715 ~ 53154614 (+) True G520560
TU590262 lncRNA upstream 49544 53109139 ~ 53109367 (+) True G520531
TU590238 lncRNA upstream 66747 53091715 ~ 53092164 (+) True G520509
TU590237 lncRNA upstream 67874 53090782 ~ 53091037 (+) True G520508
TU590236 lncRNA upstream 69277 53089366 ~ 53089634 (+) True G520507
TU590492 lncRNA downstream 122003 53281018 ~ 53281230 (+) True G520753
TU590499 lncRNA downstream 127404 53286419 ~ 53286990 (+) True G520760
TU590700 lncRNA downstream 398374 53557389 ~ 53557596 (+) True G520958
TU590701 lncRNA downstream 398861 53557876 ~ 53558084 (+) True G520959
TU590718 lncRNA downstream 415337 53574352 ~ 53574555 (+) True G520976
XR_005052417.1 mRNA upstream 91168 53066027 ~ 53067743 (+) True LOC118965081
XM_036980422.1 mRNA upstream 599999 52555023 ~ 52558912 (+) False LOC110502468
XR_005052452.1 mRNA downstream 4080 53163095 ~ 53163203 (+) True LOC118965121
XM_021606800.2 mRNA downstream 195763 53354778 ~ 53759596 (+) True LOC110526153
XM_036980433.1 mRNA downstream 861097 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 861100 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 923730 54082745 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 503614 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 879913 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2236814 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2423675 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3407162 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 766927 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1110910 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1720684 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1761457 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2325234 55484249 ~ 55484607 (+) True G523529

Expression Profile