RNA id: XM_036980433.1


Basic Information

Item Value
RNA id XM_036980433.1
length 2224
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110526155
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54020112 ~ 54035663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGCGCACCGATTTGTGTCAGGAATTGCGAAACTATTGGGGCTGTACATGCGAATAGTCATGAATCTGAGATTCCATTAAGTAGTGTAAAGTTTAGATCTAGGCCTAGCATGACAAAGCGCTATATTGTGGAACACAAAACCCATCGGGTGGTCctgagtttcatcagctgttttgCCGGAGGCGTCTTCctggctgcctgtctgttggACATCATCCCAGACTACCTGTCGGACATCAATGCTGAGCTGGACGCACGGAGGGTGGACACCAGCTTCCCCCTCCCAGAGTTCATCATGGCTGCAGGCTTCTTCACTGTGCTAATCGTGGAGAGGATTGCTCTGAACTGCAGACAAGATGCCATGCAAGGGTCAGACCAGGAGAGAGCACCTCTGATGCAGGCCAACGGGCACCGCCATGGGCACGGGCAGGGGAAAGCCTCGTCCACCAACCTGGAGGGTAGTGCCCATCATGTCCACATGGACCTCCAGGCCCACTCCTCCTTTCGCTCGTTCATGCTCTTTTTCTCGCTCTCCCTGCATTCTGTGTTCGAGGGCCTGGCCATCGGGCTGCAGACCACAGACTCAAAGGTATTAGAGATCTGCATCGCCATTGTGGTTCACAAAAGCATCATCGTGTTCAGCCTGTCGGTGAAGCTGGTGCAGAGCGCGGTCCCGCCCATGTGGGTTGCGGCCTACGTGGGCGTCTTCGCCATGATGTCTCCGCTGGGCATCGGAGTGGGCATCGGGGTTATCGAGGCTCAGCTGGCGGCAGGCGCTCTGATCCAGGCCATCCTGGAGGGGCTGGCGGCCGGGACCTTTATTTACATCACCTTCATGGAGATCCTGCCTCACGAGCTGAACTCCCCGGAGAACCAGCTGCTCAAGGTGCTCTTCATCCTGTTGGGCTTCAGCGTCATGGCGGGCCTCACCTTCCTGAGCTGAGAGGACGTCACCCACTGGAGCAACTGACCTTGCAGGAATATGGGTGTGGCTCATATGAATCACGGGACTTGATGTTCTGTACTAGGGTCGCCATAATGGGAGATGTCTCAGGGAGAAGGGAAACATAAAAACGGTCCCGTTTTACTGCAGGGTTGATGCAGGGGAGATTACAGTGCCCGTGTCTGGCTGTGCCACTTTTATTTGAGGGTCACAGCTGTCCTtactcagtatttttgtttttaagGGTGATTGACACTCATTGGTATTTTTTATCCTGCTTTTAGCATATATTTTAATTTCACAGCCAAGGATGGTAAGacagttgtttttttatttaagaaCTTTTAATGATTTCAAATAGATTATATTTAGTTAAGTAATACCTTTTAATTTGGTTGTTTTAGCACTGGAAAAATAATAAGCACACAGAATGTGGCAATATTAGTTGTTTATCCTTTGGCATACATACCAGTGgttatcttaaaaaaaaaaaaagtatattttcttTTAACAATCGCTGTTTGTAACATTTTTCACATAACTGAAGATCACTGAAAAAAGTGCTGTTCATACTGACATCATGATTGCCTGGTCCCTTTGGCAAATTACAGgtgtggcaaggagtggaatgttagctaaaaagaCTTGTATCCAGACTAACATGATATCTCTTAATAGTCAAATGAATCCGTCACATCAATATCTCATTATGTATACAGGTTAAAATGTCAATTGCATCATGTTTACACTTTTGGATGTGTGCCCACAGTTAAGTTGTGAGCCTCCACAGTTAAATTGAAGTATTAAATGTTTTATCGCCATTGTGGAACTAATTGTTTTCACCTTGGGAACTATACCATGCCTTACAAATaaagattgttttattgtcacacaGTGGATagatgcagtgaaatgtgttttacagggtcagccatagtagtacggtgcccctggagcaaatttgggttaagtgccttgcttaagggcacagTAACAGATTATTTTTTTATAAGACAAACCATTGTGACCAACATGTTAAAGAGAGATTGTTATTTTAACATGTGCTGAAGTTGAACTTCTTAACCTGTGTTTTCCTGACTCGGTTCCTCGTTGTGTTGATAGTTTCCCTACCCCAGCCATGAGTCATGTTTCTGTTGTGTAATCAAAGTTTCAAATTTATAACAACACTATCTCAAGTGGCGCTCAGCTTCCTCTTactcctccattctcctctctgaCACTGTTGCAGTAAAATAATGATTAAACAAGTTGGCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591388 lncRNA upstream 9767 54009215 ~ 54010345 (+) True G521609
TU591387 lncRNA upstream 11051 54007623 ~ 54009061 (+) True G521608
TU590549 lncRNA upstream 244588 53774086 ~ 53775524 (+) True G520810
TU590547 lncRNA upstream 250537 53769318 ~ 53769575 (+) True G520808
TU590846 lncRNA upstream 267377 53752493 ~ 53752735 (+) True G521104
TU591544 lncRNA downstream 6862 54042525 ~ 54042737 (+) True G521764
TU591568 lncRNA downstream 15608 54051271 ~ 54051519 (+) True G521788
TU591689 lncRNA downstream 221961 54257624 ~ 54257903 (+) True G521903
TU591699 lncRNA downstream 233963 54269626 ~ 54269868 (+) True G521913
TU591931 lncRNA downstream 287861 54323524 ~ 54328396 (+) True G522133
XM_021606800.2 mRNA upstream 260516 53354778 ~ 53759596 (+) True LOC110526153
XM_036980427.1 mRNA upstream 817713 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA upstream 817713 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA upstream 817713 53111284 ~ 53202399 (+) True LOC110526152
XR_005052452.1 mRNA upstream 856909 53163095 ~ 53163203 (+) True LOC118965121
XM_036980434.1 mRNA downstream 47082 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 47101 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 47101 54082764 ~ 54104736 (+) False LOC110526157
XM_036980435.1 mRNA downstream 47134 54082797 ~ 54104736 (+) True LOC110526157
XM_036980440.1 mRNA downstream 416791 54452454 ~ 54635157 (+) False brsk2b
TU591331 other upstream 64982 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1364815 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1741114 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3098015 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3284876 50720401 ~ 50735236 (+) True LOC118964907
TU591700 other downstream 234262 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 844036 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 884809 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1448586 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1528085 55563748 ~ 55566499 (+) False LOC110526167

Expression Profile