RNA id: XM_021606810.2


Basic Information

Item Value
RNA id XM_021606810.2
length 3675
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110526157
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54082745 ~ 54104736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGCGTCACTCCCCAAGCAGGAAGTGGGATATTGGGAGAGCCGGAAGAGAGCTCGCCAAAAGGAATATTCCATCACACCCCGAGGACTGTCAAGAGGTGCATTATTTTCacatctcaaatatatttttgacAGCAGGGAATTTTCATAAAAATGTGGAAGGCAGCAGCAGGTCAGTCCGTCACCGTGGCAGTGGATGACGGAGGTGACGACTGGGAGACAGACCCAGACTTTGAGAATGACGTTTCAGAGAAGGAACAGCGTTGGGGGGCCAAGACTGTGGAAGGCTCCGGTCACCAGGAACACATTAATATCCACAAGCTGCGTGAGAACGTGTCGTCCGAGCACAGTGACCTTAGGCAGAAGGAGCAGGCCGCCATGCCCAAAGCCTCGGACGGCTATGGGGGCAAGTTTGGGGTGCAGCAGGACCGCATGGACAAGtcTGCTGTGGGCCATGAGTACCAGAGTAAGCTGTCCAAGCACTGCTCTCAGACAGACACATCCAAAGGCTTCGGGGGGAAGTTTGGAGTGCAGGACGACCGCGTCGACAAGTCCGCTGTTGGGTTTGACTATGCTGGGAAGACTGAGAAGCACGCGTCGCAGAAAGACTACTCCACAGGGTTTGGGGGGAAATATGGGGTGCAGGCAGACCGCGTGGACAAGACTGCAATGGGCTTTGAATACCAGGGCAAAACGGAGAAACACGACTCTCAGAAAGATTACACCAAAGGTTTTGGCGGGAAGTTCGGAGTGGAGACGGACAAGGTGGACAAGAGCGCCTTGGGCTTTGAGTACCAGGGCAAAACAGAGAAGCACGAGTCTCAGAAAGATTACGTGAAGGGCTTTGGTGGAAAGTTTGGTGTGCAGACGGACAGACAGGACAAGTCAGCCGTGGGATGGGACCACCAGGAGAAACTGCAGCTCCACGAGTCGCAGAAAGACTACTCCCAAGGGTTTGGAGGAAAGTTTGGCATCCAGAAGGACAGAATGGATAAGAGTGCAGGTAACTTTGAGGATGTCGAGAAACCAAGACCTGCCTACCAGAGGACCAAGCCTGTGGAAACTGCCGGCAGCAGCACGGGCAGCATTAAGGCCCGCTTCGAGAACATCGCCAAGCAGAATGAGGATGAGGACAAGAAGCGGGCGGAGGGGGAGAGAACCCGCCGCCAGGCCAAAGAGAAGCAGGAGCAAGACGAGGCACGGCGCAAGATAGAGGAGACAGCCAAGGCCAAGCCTGCCTCCCCGGCTTCTGAGACCATCCCCACCATTAGCCCTACCCCTCCTGCCCAGCAAGCCTCACCTTCGTGTGTACCTGCAGCCGCCGACCCAGTTTACCAGAACTCTGGTGTGTACGAGGATCCTGCAGCAGCGGAGAATGGGGAAGATCTGTACGAGGCAGAGCCCATCTCCCGACCCTCTGCTGAGCAGACGTATGAGGAGCCTCCCGCCCAGGAGGAGGGACTCTTCCAGAGTCCTGACGAGACAGGAGATGCCCAGACATATGAGTACGGTGAGGACTTGGGGTTAACCGCAGTGGCCCTGTATGACTACCAAGCAGCTGGTGATGACGAGATCTCTTTCGACCCTGATGAcatcatcactaacattgagatGATTGACGAGGGCTGGTGGAGGGGTGTGTGCCGGGGTGCCTACGGCCTCTTCCCAGCCAATTACGTTGAGGTTCGGCAATGAGCCCGCCCACTACACCAAacagtctctctccccatcccatcCATCTCTTCTGattcctctctttttctcgcgcTCTCTCATTGTGTTGATCGCGGTGCTTCTTTCAAGTGTGCTCGACATTCTCAGGTCTTTCAGCTGTCCCtgtctttcttcctttctctcgctcctctccttgGGAGGAGGCTTCAGCCTGATAAAGGACTCAGAATAAAAGAAGATTCACGGACAAACACTCACCCTGGCTCTGCTACGCAAtcgagagagataaagagagtgagCGGGTGAGCCCTGCTATGACAGAAAGGCCTTTCATGGTAAAGCAAGTCATCAGAAAAACACTACTCTCATTATAATGGCTAGTTATATTCTTGGTTTTCTATAAGATGCCAGACACTCTTGCTGCTTTGCCCCACTTGCACCAGTTAGTTCATTTACTTTAACTTAAAATGTTCCCTCTTTGACATGTATTCAAACTTCCACGGTATCGATTGAGACCTGGCTGCTACAGTATCACTCGCAGTATAGATATTAACATCACCAAAGATGGAGATCACAGAGGTGACGTAGAAATGAACCCCATGCTTTGTGTGCATATAGTGACGTTGTGGTCCTCTTTTTTTAAGAAGGCTTAAAATCACTTTTAGACCAAGTTTGGAACTAGCATGATGACATAACACTGGAAATGTattatgtttagatttttttttttaatgccacTTCCAGAAGTGGTTTGAAGTTGATTGGTGTGCTAGCACTTTGGTTCAGTTTGGTAATAGTGCAGACCAATTGATTGGTGTGTAACTGAATTGGTGTAGCTGGTTCGGAGAGAACTCTGAGCCGCGGGGGATTTCTCTCTCTTTGGAACACTTGTTTGCTTTAGTCAGCGGAGATCAGATAACACGAAGAAACCCAATAGGGATGTTTTTGAGGATGTGTTGTTGAAAACCGCAAGTTTGCTTAGGCTTACCCACATTTTTGGTGTAACGCCTGCGTTCGCTTAATCAAGGGGCGAATATGATCACCATAGATGTTGTGAACCTCAGCTGCGTCTCGTCTCCTCCTTTTCTCATTGTCACGAAAGAAGACTCCAGAAAGCAGTAgaagaaaataaataatggaGCTGTCTGTCTTTTTAATCACTCGCCCATAGTCCTGCGGTAGATCATGTCAGATAGGATGCTGAAAGTAAACGATGTACAGAAAGATGTTTTTATGATGCTCTGAGAAATATATATTGAGTCGAAAAAATAATTTTGTTTTTCAAACCCCTGCCCCTGCTGCGTGTTCGATGTAGACCAGACCTGTATATTTTGTCACAGGCGTGATGTCACGCTGCCTGTGACAGGAGTCTGTCACGTGTTCTATGTCATGCTTGTAGCGtgttcatgtactgtatgtgcaacTTGGTATATTATGATGTCTGGGGCCACATTGACATCCGTATCATGACCGACATGTACTGTTGACTGAGTGATATTTATCTATAGGTGGCTATAAGTACTAAAATAATACTCTAACAATATTGGGCTATAAGGGGGATTTTGACTGTGATTGTTTCTAAAACGCAGAGTGATTATTTTAACCGATGACAATCTCACCCCAACGTCACGGTGATCTAATGCAATAGTGTagcttcagtaggtgtgtgtgggtgagtggggATGGGGTCTCATCAAATAAATTCTTTGGGGTTTTATAATAATAAAGTGACCTTTTTATATTTGTTTCTTTATCTGTACTTCTGCTTGCTAAAGTCACCACATTACCTgcttgttcttttttttttgtaagtaAATAGTTTAAATAAACAATGTATGGATAGTATTTTGGTTACTTCGCTTCGTCTTTACATCTGTTATCTACATCCTGAAATGAACAGCTTCTGTATAACACATCCTCAACCTTATGAAGGTGCGTAATGGGCTTTGCAGGCATGGTTCCCTTGCGCGCactgaataaatgtaattcaaccaCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591568 lncRNA upstream 31245 54051271 ~ 54051519 (+) True G521788
TU591544 lncRNA upstream 40027 54042525 ~ 54042737 (+) True G521764
TU591532 lncRNA upstream 47156 54034910 ~ 54035608 (+) True LOC110526155
TU591388 lncRNA upstream 72419 54009215 ~ 54010345 (+) True G521609
TU591387 lncRNA upstream 73703 54007623 ~ 54009061 (+) True G521608
TU591689 lncRNA downstream 152888 54257624 ~ 54257903 (+) True G521903
TU591699 lncRNA downstream 164890 54269626 ~ 54269868 (+) True G521913
TU591931 lncRNA downstream 218788 54323524 ~ 54328396 (+) True G522133
TU592071 lncRNA downstream 328351 54433087 ~ 54433300 (+) True G522263
TU592076 lncRNA downstream 329996 54434732 ~ 54434931 (+) True G522268
XM_036980433.1 mRNA upstream 47101 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA upstream 47101 54020115 ~ 54035663 (+) False LOC110526155
XM_021606800.2 mRNA upstream 323168 53354778 ~ 53759596 (+) True LOC110526153
XR_005052452.1 mRNA upstream 919561 53163095 ~ 53163203 (+) True LOC118965121
XR_005052453.1 mRNA upstream 923749 53158911 ~ 53159015 (+) True LOC118965122
XM_036980440.1 mRNA downstream 347718 54452454 ~ 54635157 (+) False brsk2b
XM_036980442.1 mRNA downstream 347718 54452454 ~ 54636666 (+) False brsk2b
XM_036980439.1 mRNA downstream 347718 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA downstream 347718 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA downstream 347718 54452454 ~ 54639254 (+) False brsk2b
TU591331 other upstream 127634 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1427467 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1803766 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3160667 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3347528 50720401 ~ 50735236 (+) True LOC118964907
TU591700 other downstream 165189 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 774963 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 815736 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1379513 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1459012 55563748 ~ 55566499 (+) False LOC110526167

Expression Profile