RNA id: XM_021606823.2


Basic Information

Item Value
RNA id XM_021606823.2
length 3807
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110526161
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54793125 ~ 54954478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTCAAGAGCGGAGTGTGTGAGTGCACAcacaaaagagagagaacagacaatagaaagagagagcggttCTATTCTGGTGTATTTGTCTCCTCCAGACACCCAggactcctctgtctctctctaccccggCAGGGTGCGTTGCTGATGGTGTAACACTAGATCGGCTCAGCCTCCCCCCTTTGGGAACTCTGGAgctccctctctcaccttctgtGTTTGCTCTCCACCGACTGGCTGACTTTCTTTATTTGGAGAGTGCGAGAGTGTGTTTTACTCGGCAGGATTAGGCAGTCTGTATGCACTCTGGTACAAGCTGGTACGGTGGAGGGCGTTTCGTTCGTGAGTGTGTTGTTTGCCCTCTCGCTCTGCGAGCCACACTCGAGTCTCTCATACACCCTTTGGCTCTAACGGAAACACGCACCTACTATTCCCAAGGATTTGGGATATGTGTATAAAGGTTTAGCCTTCTCTGAATTGTGGATACAGAGAGGACTACACATTACAACTTCACTGAGCAGGTTGAGAGAGGGAGGATTTCCCTCTTGTATTACCAGTGAGGTCTCCGAGTACTGAGGGGCTGCTTTTCCCATTGACGCAATTTCAGATAGCGAACCTGATGAGAGGATGCAGCAGGAAGCAGATGAGCGACTGAGCCCCACCTGAGCCCTGACTCCTGACCCATCACCTCCCACTCCCGCCCCAACTGGCCATCCCATCATGCACCTGCCATTTCGAGGTCGTCTGAAGCTGCTAGTGGCATCTCTGACCGCCATCATCCTGCTCACCTGGCTCTACCTGCTGGCTGGGAACCTGGAGAatGGGCgttctctcctcctgtccccctgtctgtcAGAGACCCCCGAGGCACGGGTTCTAGAGCGGGTGGTTCTAGAGTCGCGGGTGCgcgagatggaggaggagaacaggCAGATCCGATTGCAGCTCAACCAATTGCAGGGTACGGTTGGCCAGCCCGCCGACGGTGGTAACTACGGCAATGCGGCGTGGGGGGCATCAGCTGACACTGGGCCCGAGGATGTGGAGAACACGGCAGAGGAGAGAGCCAATCACACCGAGTGTCCCCGTTCGCCCACCATACTGAAGTGTGAGCTGATCCATGTAGCGTGCGTGTGTGCCGGTCACAACGCCAGCAGAGATGTGGTCACCCTGGTCAAGTCCATCCTGTTCCACAGgagaaaCCCTCTCCATTTCCACTTCATCACAGACGCAGTAGCCAATCAGATCCTGAGTTCTCTGTTCCAGTCCTGGATGGTTCCGTCTGTACAAGTTAGCTTCTATGACGCAGACGAACTCAAGTCGGAGGTGTCATGGATACCTAACAAGCACTACTCAGGTATCTACGGCCTGATGAAGCTGACCCTAACCAAAGCGCTGCCCTCTGACCTCACAAAGGTCATCGTCCTGGATACGGACATCACCTTCGCCACCGACATTGCTGAGCTCTGGGCCATCTTCAGGAAGTTCACTGACAAGCAGGTGATAGGTCTGGTGGAGAACCAGAGTGACTGGTACCTGGGGAACCTGTGGAAGAACCACAAACCCTGGCCCGCCCTGGGACGAGGCTTCAACACTGGGGTCATCCTGCTCTACCTGGAGAGGCTGCGACGGATTGGCTGGGAGCAGATGTGGAGGCTGACCGCCGAGAGAGAGCTGATGAGCATGCTCAGTACCTCGCTGGCGGACCAGGACATCTTTAATGCGTTCATTAAGCAGAACCCAGTCCTAGTGCATCAGCTGCCCTGCTTCTGGAACGTTCAGCTGTCTGACCACACACGCTCCGAACAGTGCTACACAGAGGTGTCTGACCTCAAGGTGATCCATTGGAACTCTCCTAAGAAACTTCGCGTGAAGAACAAGCATGTGGAGTTCTTCAGGAACCTCTACCTTACTTTTCTTGAGTATGATGGGAACCTACTGAGACGAGAGCTTTTTGGCTGCCCCAGCCAGGCCACCTCAGAGAGCGTTCGGTTACAAGGAGCTCTGGAGGAGCTGGATGAAGACGACCAATGTTATGACTTCCGGCGGGAGCGAATCACAGTGCACCGCGTGCACCTCTACTTTCTGCAGTACGAGTACACGCCCGCCGGGGATGACACAGACGTCACGCTGGTCGCACAGCTCTCCATGGACAGGTTACAGATGCTGGAGGCCATATGTAAGCACTGGGAAGGACCTATCAGCCTGGCCCTGTACATGTCAGACGCTGAGGCCCAACAGTTTCTGCGTTACGCCCAGGCCTCCGAGGTGCTGAAGAACCGTAAGAACGTGGGCTACCATATCGTTTACAAGGAGGGCCAGTTCTACCCCGTCAACCTGGTGAGAAATGTGGCCCTGAGGAACGCCAACACACCCTATGTGTTCCTGGCAGACGTTGACTTCCTGCCCATGTACGGCCTCTATGATTACCTCAGAAAGTCAGTGGTCCAGTTAGACATGGCCCACACTAAGAAAGCTCTGGTTGTTCCGGCCTTTGAGACGCTGCGCTACCGCCTCTCCTTTCCCAAATCCAAAGCTGAGCTGCTCTCCATGCTGGACATGGGGACCCTCTACACCTTCAGGTATCACGTCTGGACCAAGGGCCATGCTCCTACCAACTATGCCAAGTGGCGGACAGCCACCACGCCCTATAAGGTGGAGTGGGAGGCGGACTTTGAGCCCTATGTGGTGGTGAAGCGGGACTGTCCTGAGTACGACCAGCGCTTTGTTGGATTTGGCTGGAACAAGGTCTCCCATATCATGGAGCTAGATGCACAGGAGTATGACCTGATGGTTCTGCCCAACGCGTTCATGATCCACATGCCACACGCACCCAGCTTCGACATCTCCAAGTTCCGCTCCAGCCCAGGCTACCGATACTGCCTGCAGACCCTAAAAGAAGAGTTCCACCAAGACCTGTCCCGGAAGTACGGCGCAGCCGCCCTCAAGTACCTTACTGCTCAGAGGAACATCTAAACCAGGACTCCCAAGGGCCACTGGGCTTCATACCTAGGGCCCGAATGGCCCCCATGCTGCTGCCTCGCAAGTCTACAGGGGTTTGGGAATACTGGCAACTATCAGCCAATATCACTACTAAGCTTGAATAGCTTTAAAGGCTTGTAGAACATTCTGGAGATGTGTTAGCTAAACTTTCTGGGGTGGTTTGGGCTGGGATGACCCACCCAACTATGCTACAATGGGTTATGACCCAAACTGGAATAAAAACAAAGAACCAAACAGATCAGACATGACAGTGGTCACACGATATTGGGCTCACTGGGAAGACGTTTCTCTGAAAGGAATGAGTGGTTGACTGATTTAAGTCTGGGAGTAAGTGACGATTATCATGATTTGTTCTGACAATCAGGGCCTTTTCTGAGGAAAATACATTTCAAACCAATCCGTCCACATGGGATATCTGTACCTGGAACTCAAGGACAGGAATTTGGGGAAACACAGAACTGAAAGAAAAGAAAGTTGTATCTTCCCTGGTCTCTTCAAGGGAACGAGTCGGAATCACGTTCGGAGTGACCAATCGAACTGGAGAAACATTTAAGCCTTATAATTTTCCATTATATTTAATAAGATATTTAATGATATCAGTATTTTTCTCAATGTAAATGATTATCAATTAATAACAAACAAATATGGCATACATACACTATCAGTCAAAATGTTTAgaacatttactcattcaagggtttttctttatttttacaattttctacattgtagaataatactgaagactgcacttgattggctcaaacacattaagaaggaaataaattctacaaatgaacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU592328 lncRNA upstream 89715 54789509 ~ 54789736 (+) True G522510
TU592324 lncRNA upstream 94667 54784542 ~ 54784784 (+) True G522506
TU592321 lncRNA upstream 98261 54780753 ~ 54781190 (+) True G522503
TU592298 lncRNA upstream 99879 54778993 ~ 54779572 (+) True G522480
TU592310 lncRNA upstream 116852 54762388 ~ 54762599 (+) True G522492
TU592893 lncRNA downstream 66919 55021397 ~ 55021641 (+) True G523053
TU592900 lncRNA downstream 73181 55027659 ~ 55027916 (+) True G523060
TU592930 lncRNA downstream 92863 55047341 ~ 55047561 (+) True G523090
TU592931 lncRNA downstream 94141 55048619 ~ 55048934 (+) True G523091
TU592962 lncRNA downstream 116181 55070659 ~ 55071002 (+) True G523122
XM_036980439.1 mRNA upstream 240197 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA upstream 240197 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA upstream 240197 54452454 ~ 54639254 (+) False brsk2b
XM_036980442.1 mRNA upstream 242785 54452454 ~ 54636666 (+) False brsk2b
XM_036980440.1 mRNA upstream 244294 54452454 ~ 54635157 (+) False brsk2b
XR_005052418.1 mRNA downstream 111722 55066200 ~ 55068243 (+) True LOC118965082
XR_002473894.2 mRNA downstream 172578 55127056 ~ 55135622 (+) False LOC110526162
LOC110526930 mRNA downstream 397251 55351729 ~ 55364742 (+) True LOC110526930
XM_036980447.1 mRNA downstream 420618 55375096 ~ 55448136 (+) False LOC110526163
XM_036980448.1 mRNA downstream 420620 55375098 ~ 55448136 (+) False LOC110526163
TU591700 other upstream 609192 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 924321 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2224154 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 2600453 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3957354 50911828 ~ 50922097 (+) True LOC110526128
TU593407 other downstream 529771 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 609270 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 959865 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 1155801 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2621606 57576084 ~ 57581070 (+) True G525645

Expression Profile