RNA id: XR_005052418.1


Basic Information

Item Value
RNA id XR_005052418.1
length 1883
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118965082
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55066200 ~ 55068243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCTGATTTAgatagaattacatacagtaaGGTGAATTTGCCCCAGAAGATTACAGGTTCGATCAAACAAAACAACATGGTCTCTTTATTTTACTGCATTCTGCCTCAATACTTCTgccttttttaaaaacatttcccTCTATTGTCATCATCACTTTTTTCTTTTCATCTCTCCTCCACACCCTCAAGTCTATTTGTTTGCATCACCTCTGTTCTTGGTTGGTTTATCTGTTTTCATATCTCCTACTATAACAGTGTTGTATCCACAAAGTATTACCTTTCATtacacaaaagctgcggcccttgcaaaacaagggaaacaaccagagcggttgacatcaccgattgaacaCTACTAGCGCAcgccgctaactagctagccatttcacatcggctacaatGCTATTTCCCACGATATCTCTTCCTGGCTCTAACCCTTTATTTCCAACTCTCCCAATGTGAAATGTTCTCCCTCATCATCCTGtctgtctttcactctctctccctctcttctcctcctctttctgctACAATTATCTTAAACCTTTCATCTGTAAAATAACTCACCTCCTCCTAACCTTCCACTTCAATGGTTCTGAAGGGCAGGCTGTTCTCCACCAATGACTTTGGCCTAACCAACTAGAAGCTTACAATGGGCCACtgtaacacactcacacacgcaagCACTTGCATGCacgcaagtgcacacacacaaaccctcccttgtctgtttctcctctgtgtctctgtcggGTGCTTTGGATCCATAAATACTGATGAAAGGTAAATGTGGGGTGCATTTTTCTGTTACCGTGACGACAGACAGAAGACGAGTGAAGAGAGCAGGGGCCTCATTTTTAAAAAATTTCTTAGATTTATACTTGAACTTAGTCCTAAAAATCATTTCCAACGGTGTGCTTATGTTCGATTCATAAAAGATACTGAGCATAAAGAACCTTGCTTACGCAGGTTCTAATAAGCCCATTTTTAACTTACGCACCTGTGATCTATAAATCTCAAATAACTTAAAATTGAGTGCACCTGAATGTGCCTTACAATCAGAGAATTCCCCTTATAGAATACTAGCACAAATGAGGGTTTAGTCAGGAATAGccatggaccaaaagagaaaagtAAACTTTTTGGAAGACGAGATCACGGCAATGGTAGAGGAGATTGAAGACAGGCAACACGTATATATTCTGTTGACTAAATAGTGAGTTGACAAACAAAACCAAACAGGTAGCTTTGCGAGTGTGTCgccgctgcagtgaacgaggtggggCAGCAAGACAGAACTGTGGCTGATGTGAAAGACCTGGCACTCCAGAGTTCTCCCAAATGGACCAGCGCATCGGGGAAATCATTGGGGAAAGCGCATACACTGGCACATGCGCCGACCGCGACAGTGAATGTTTAAAAAAAGCAGTAACATTGGAAACGGTAAAGTCGGTGCGCGAAACCCCAACCACTGCATCACTAGATCACGAAACAGGGGAAACTGCGTTGCAGCCCATGCGCCCTCCACCCAGGGATAAAGTGGGTGAGGCTCCCAAAGCAGCAGGTGCCAGGAATGAGGGCGAAGGTTTGGCCACAGGTGTCGAGGGCTGTCCATGTCTGCGTCCGTGCGCCAGGATGAAGTCCGTGAGGCCCCAGTTCCCAAGCGTCGCAGACCCGCAGGTGCCAGGGGTGAGGGGGAATGTTTGGCCACAGGTGTCGAGGGTTCATCGACGTCTGTGTCCACGTCTACAGTTCGCGTGTTGACCGCTGCAGTCCTGCAAACCCAGAATGAGCTGAACACATTGGTTGGGTAGATTGTGACTGAACTCGGAAGAATACGCAGGGTTTACATTCATTTACATAATGCAATTGTTGAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU592931 lncRNA upstream 17266 55048619 ~ 55048934 (+) True G523091
TU592930 lncRNA upstream 18639 55047341 ~ 55047561 (+) True G523090
TU592900 lncRNA upstream 38284 55027659 ~ 55027916 (+) True G523060
TU592893 lncRNA upstream 44559 55021397 ~ 55021641 (+) True G523053
TU592328 lncRNA upstream 276464 54789509 ~ 54789736 (+) True G522510
TU592962 lncRNA downstream 2416 55070659 ~ 55071002 (+) True G523122
TU592972 lncRNA downstream 66533 55134776 ~ 55135607 (+) True LOC110526162
TU593086 lncRNA downstream 183706 55251949 ~ 55257369 (+) True G523235
TU593263 lncRNA downstream 235998 55304241 ~ 55333015 (+) True G523403
TU593325 lncRNA downstream 274994 55343237 ~ 55343462 (+) True G523464
XM_021606819.2 mRNA upstream 111722 54793125 ~ 54954478 (+) False LOC110526161
XM_021606822.2 mRNA upstream 111722 54803024 ~ 54954478 (+) False LOC110526161
XM_021606823.2 mRNA upstream 111722 54879451 ~ 54954478 (+) False LOC110526161
XM_021606824.2 mRNA upstream 111722 54920058 ~ 54954478 (+) False LOC110526161
XM_036980445.1 mRNA upstream 111722 54920472 ~ 54954478 (+) False LOC110526161
XR_002473894.2 mRNA downstream 58813 55127056 ~ 55135622 (+) False LOC110526162
LOC110526930 mRNA downstream 283486 55351729 ~ 55364742 (+) True LOC110526930
XM_036980447.1 mRNA downstream 306853 55375096 ~ 55448136 (+) False LOC110526163
XM_036980448.1 mRNA downstream 306855 55375098 ~ 55448136 (+) False LOC110526163
XM_021606829.2 mRNA downstream 306856 55375099 ~ 55448136 (+) False LOC110526163
TU592296 other upstream 125327 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 125327 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 795941 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 1111070 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2410903 52651940 ~ 52655297 (+) True G519603
TU593407 other downstream 416006 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 495505 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 846100 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 1042036 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2507841 57576084 ~ 57581070 (+) True G525645

Expression Profile