RNA id: LOC110526930



Basic Information


Item Value
RNA id LOC110526930
length 2042
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110526930
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55351729 ~ 55364742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAGTGTCAAATTAGATCAACCTTCTCCTCAGAGCACCAAATCAAGTTTCACCTATCCTGAGACTTCCCGACCCCATCCTGAACCCATCCTCACCCCTGACCCCTTGACCCCCGACCTCCACATCTCTGCCATCATGCTCTCTACATTCCCCCCTGCTTCATCGAGAAGAGCAGCAGCCATCCACTCACTGCTAAGGGATTCCTCCGAGAGTTCTGGAATGTTGATGTGTATCAAAGTTCTAGAATCCTACTTTGTGTTCTTCAGAGAACCCCCAGCCAAGGcaccccctcctcccctgccCCCAGAAGAGGATATGAAGGACATCCCAGGCccggtggaggaggaagaggcggaGGAGTTCTGGGACTTGTATGGATACCAAATCAAAATCCTCAAACTTCCCAAAATGCTCCCACTTCCTAACCTGGTCTACGTGGTGTGGCTGTTCTTTGTGATGATGGCGTGGAACTGGAACGTGTGGCTGATCCCTGTGCGCCGGGCCTTCCCCTACCAGACTGCAGACAACATCTACTGGTGGCTGTTAATGGACTACACCTGTGACCTTATTTACATCAACGACATCCTGGTCTTTCAGCCCCGCCTGGAGTTTGTACACAGAGGAGATATTGTGAGTGACAAAAAGGACATGAGAGACAACTACATGAAAACAGAGCGATTCAAGATGGATTGTATCAGTATGTTCCCCATGGAGATATTTTACTTCTTTACTGGAGTTAACTCCCTCCTCAGATTCCCCCTCCTACTGAAGtacATGGCTTTCTTTGAGTTCAACGACCGTTTGGAAGCAGTAATGAAGAAAGCCTACATCTACAGaggGATCCTGACCACTTCCTAACTGTTGTATTCTCTCCACATCAACGCCTGTCTGTTCTATTGGGGTTCTGACTATGAGGGGCTGGGGTCCATTAAGTGGGTCTACGACTGCAGAGGGAACAGTTATATCCGGTGTTACTACTTGGTCTCCCGGACCCCACCACCGTGTTCGAGATCACATTCCAGCTCGTCAACTACTTTGTTGGTGTCTTTGCTTTCTccatcattatttttCAGATGAGAGATGTGGCGGGGGCTGCCACCCGTACTACCGGGCCTGCATGGACAACACCATCAAGTACATGACCTCCTACCACATCCCCAAAGAGGTCCAGAACCGAGTGAAGACCTGGCACGACTACACCTGGAAGATACAGGGCATGCTGGaggAGCAGGAGCTGTTGATCCAGCTGCCAGATAAGATGAGGGTGGACATGGCTGTGGATGTTCACTACTACATTGTCAGTAAAGTGGCCCTGTTCCCGgGCTGTGACAGACAGATGATATTTGACATGTTGATGAGGCTCGAGTCTGTGGTATACCTGCCTGGGGACTTTGTCTGTAAAAAAGGTAGACCTGGTGAGATCGGCAGGGAGATGTATATCATCAAGCAGGGGGCGGTTCAGGTGGTGGGAGGACCTGATTTGAAAACTGTGTTTGTAACAATCAGGGCCGGCTCTGTGTTTGGAGAAATCAGCTTGTTGGCAGGGGGCGGGGGGAACAGACGCACGGCCAACGTGTGATGGCTCACGGATTCGCTAACCTCTTCATCCTGGATAAGAGGGACCTCTCAGACATCCTGGTGCACTACCCCGAGTCCCAGAAACAAAGTGAGGGGGTGACCTCTCGAATCCAACTTTCCTACCTTTTCCACTtcccctatccctctcttctTACCCAGGACACATCCAAAAGGCCCGAGGAGGGAGGTCAAATGGAAAGGCTGGGTTGTGGGATATGAGTCTTGGAGAAGGGAAGGGTGGAGGGGATGGATAACCTACACACAGCCAACACATATCCCACTACATATTGTACACCGATCTTGTGATTGCTCACGTGATGGCGAGGCAAAAggtgcgctctctctctttctctcactttacCAAGCCTCTATCTCTCCGCTTCATCTCTTCATCCAtctgtatccctctccctctatctgttcATCCATTCTTTATCTcgatctctttccctctctgctgtaat

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU593325 lncRNA upstream 8267 55343237 ~ 55343462 (+) True G523464
TU593263 lncRNA upstream 18714 55304241 ~ 55333015 (+) True G523403
TU593086 lncRNA upstream 94360 55251949 ~ 55257369 (+) True G523235
TU592972 lncRNA upstream 216122 55134776 ~ 55135607 (+) True LOC110526162
TU592962 lncRNA upstream 280727 55070659 ~ 55071002 (+) True G523122
TU593361 lncRNA downstream 36590 55401332 ~ 55454861 (+) True G523490
TU593379 lncRNA downstream 67051 55431793 ~ 55432133 (+) True G523508
TU593396 lncRNA downstream 107013 55471755 ~ 55472673 (+) True G523520
TU593427 lncRNA downstream 141538 55506280 ~ 55506566 (+) True G523549
TU593431 lncRNA downstream 146223 55510965 ~ 55511275 (+) True G523553
XR_002473894.2 mRNA upstream 216107 55127056 ~ 55135622 (+) False LOC110526162
XR_005052418.1 mRNA upstream 283486 55066200 ~ 55068243 (+) True LOC118965082
XM_021606823.2 mRNA upstream 397251 54879451 ~ 54954478 (+) False LOC110526161
XM_036980447.1 mRNA downstream 10354 55375096 ~ 55448136 (+) False LOC110526163
XM_036980448.1 mRNA downstream 10356 55375098 ~ 55448136 (+) False LOC110526163
XM_021606829.2 mRNA downstream 10357 55375099 ~ 55448136 (+) False LOC110526163
XM_021606828.2 mRNA downstream 13804 55378546 ~ 55448136 (+) False LOC110526163
XM_021606831.2 mRNA downstream 46604 55411346 ~ 55448136 (+) False LOC110526163
TU592296 other upstream 410856 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 410856 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1081470 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 1396599 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2696432 52651940 ~ 52655297 (+) True G519603
TU593407 other downstream 119507 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 199006 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 549601 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 745537 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2211342 57576084 ~ 57581070 (+) True G525645

Expression Profile


LOC110526930 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

LOC110526930 Expression in each Bioproject

Bar chart with 14 bars.
LOC110526930 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00020417 True 2412 mRNA 0.56 18 CM030127.1 18235639 ~ 18247655 (-)