RNA id: XM_021606828.2


Basic Information

Item Value
RNA id XM_021606828.2
length 4736
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110526163
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55375096 ~ 55448136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGTAATTTAGTTATTTCTGTTTGTTGAGAGAGACCAGGGTGTGTCTCGTCATCTTTACAGACCGTGCCAATGAATGGATATTTTTAGATGATTTATGAGTTATCCTTAAAAACAATTACAGACAAGTGTCAGGAATAGCAATCTTGATTTGGCATCGGAGCAGATTTTCTACACGCTGGGTAATGGAGAGCCTGTTGATTGTTACAAATCTTGCTTCAGGAATAACTccggtCCAGAGACCCAGTGCTCTGCTCAGCCCTGCGGTCATGTTCGGAACAAGAAAGACCTGGGACCTTGGCCACGCCCCCTGTCTGCAGGAGCTCTGGAAGAAAGACGTCTCATTGGATGCGAGCTCTGTGGACTTTTTGATGAGTGATGGTGAGGAGGACTGCTCCTTCCTGTCTCTACCCGCAGCCGCTTTCCCACAACACACCGCTCTGACCACTACTGACCAATTAGAAACCAGCCAGCACAACCACGACCAACAGCTACTCATACAGACACTGCAGGAGAAAGTGTGCGAGTTCCAGGCGCGTCTGCGACGCGAGGAAGCTTCCCGGTGTCTGCAGCTGCAGAGACTGCAGCAGAGTCACGAACAGAGTCCGCAGGAGAAGACTAACGTCATACACACTCTACAAGAGGAGCTGCACACAGCCCTGCCCAACGgtgtTCGGGCAGTGCAGAGGCTGGGTGAGCCACAGGAGCATCAGCAGCACAGCAACCGTCTCATTCAGGAAGGAGAGCAGCTCATCGTAGCGCTGCGCACACAGGTGGGGGAGCTGGAGGAGAAGCTACTAGACCAGAACCAGGAGGTGGAGAGACTGCGGTCGGAGCTGGGGGCGACCGACCTGGAGAAGCACCTGGAGCTGCTGGTGGTCGAGAACGAGCGGCTGAAGCAGGAGCTGAAGGCATGCAAGACCTCACTGCTCCAGGAGGCTCCTCCACCGGCCTGCACAACCACTGACTGCCCCCACAGCCAGGATGCGGAGGCCCTGCGTGAAGCGGCGTCTCGCTGGGAGAGCCAGGCCAGACCGAGGCAGAAGAGGCTGGCTGAATTGGAGCAGCAGGTCCTGGAGAAGGCCAGCAGGGTGGAGACGCTCAGCCGACAGCTGGAGGAGTCCAAGCGCCACGCGGGGGAGATGCAGAGGCAACTGGAGGAGTCTAAGTGTCAGCAGGGGGAGGTGGAGCAGCAGCTGAGTGTGCGGCTCAGAGATTGTGAGGAGGAGCTGGCCAGACAGGCCACCCGGCCCCATCAGGTCAAGTATGTGACTGAGATAGTGGAGGTGGAGTCGACAGAGTCTCAGCAGGCCGTAGCCGAGGCCCAGGCCAAGAGCGTCGCCCTGCAGGAGCAGCTATCACTGCAGAGACAGCTGCTCCGAGAGCTGGAGACACAGTTGCACGATTCCCAGAGGACCAGCACCCAGCTCCGAGCTCAGATCCTGGTGTACGAGGGGGAGATGGAGCGGGCCCAGGGCCAGTTAGAGGCTGAAATGCAGaacctggaggaggagaagaacaggGTGATAGAGGAGGCCTTCATCAGGGCCGAAAGCGAGATGAAGGCCGTGCATGAGAACCTGGCAGGGGTGCGTATGAACCTGTTGACCCTGCAGCCAGCCCTGCGTACTCTCACCTGTGACTACAACTGTCTGAAGAGACAGGTTCAGGACTTCCCCTTCATGCTGGAGAAGGCCATCACCGAGGCCAAGCAGGAGATCTGCCAGGTGATAGGCGAGGTGAGCAGTGCCAACCAAGAGCTGCTGAGGAAGTACAAGAGAGAGATGAACCTGAGGAAGAAGTGTCACAACGAGTTGGTGCGCATCAAAGGTAACATCAGGGTGTTCTGTCGGGTGCGGCCGGTGTGCCGGGGGGAGCATGATTCTGCCGAAAACATGGTCAGCTTTGACCCAGACGACGATGCCCTTCTCTATCTTTCCAACAAGGTCAAACTGATGACCTTTGAACTGGACAAGGTGTTCCACCCTCAGGCCACACAGGAAGAGGTGTTCCAGGAGGTCCAGTCCCTGGTGACGTCCTGTATTGATGGCTTTAACGTGTGCATCTTCGCCTACGGACAGACGGGCTCAGGAAAGACCTACACCATGGAGGGTGTGGCCAAGGACCCGGGCATTAACCAAAGGGCTCTCAGACTGCTGTTCTCTGAGGTGACTGAGAAAGCGCCCGACTGGGACTTCAAGATCACTGTTAGCATGGTGGAGATCTACAACGAGACCCTACGGAACCTTTTGGGGGACATCCAGGGTGAGAAGCTGGACATCAAGATGAACCCGGACGGTAGCGGTCAGCTCTATGTGCCAGGCCTCACGGAGTTCACTGTCCAGAGCCCTGAGGACATCAACAGGGTGTTTGAGCTGGGTCACATGAACAGGGCCACAGCCTGCACCAATCTGAACGAACACAGCTCCCGCTCTCACGCCCTCCTCATCATCACCGTAGCAGGCGTCAACTCCTCCACCGGGCACCGCACGCAAGGTAAGCTGAACCTGGTTGACCTGGCTGGCTCAGAGCGGATTGCTAAATCTGGGGCAGAGGGCAGCCGTCTGCGAGAGGCCCAGTGCATCAACAAGTCCCTGTCGGCCCTTGGTGATGTCATCAATGCGCTACGGAGCCGACACTCCCACGTGCCCTTCAGGAACTCCCGGCTCACCTACCTGCTGTCTGACTCACTGAGCGGGGACAGCAAGACCCTGATGATGGTGCAGGTGTCTCCCCTGGTCAGTAACATGAGTGAGTCGGTGTGCTCTCTGAAGTTTGCCCAGCGGGTACGGACCATCGAGCTGGGCAATGCCACCAGGAGACAGTGGGAGaattcctctacctcctcctcgcCCACCCACGACAGCGTGGAgCTGGACTCTCCCCCGGTGACTCCCGTGCCCCTCCCCATCTCTCGGGCCAGCAGTGCCGGCTccaccctctctgcctcctccaaaACCCCCACCACACGACGGAGGTCTCAGTCCCAGCTCTCTACAGACAGGCTGTTAGGCAGAGCCATCCCATTGGTGGGGGACGGTGGGCAGGACGACTGAAACTGTCTGTCTGAAGGCTCCAATGGATTCAGAATGAAACCGGACCCTGATCCAGTCAGCCATTGGGCCATCTGAACAGGAGGGTGTTAACCAGCACCTTGACCCACCAATAGAAAGTCTCTGCTTTGGGAACAACCTATCAGCCCTGTCTCCTTCTGCTGATCTCACTCAGCCAATGGGTGAGAGCAACTGGACTAGGCAAATTATCAGATCTGACCGATTGAACGGTGACATTTTAATTTGAAGAGCAGAGGGGTAAAGAGGGGGATATGAACTTTGACCCTCATGGATGGCTGCCTCATGCTGCGTACCGAGACTCAGTCCCAATGCTCTAAAATGGCCTCCAGTTCTCAATTTCTTAATCACCGCTGAAAGGAATCGATAGGTGTTCATTTTAGCCAGGACTGTTGTACAGCCCCCCCATATCTTAACTACGTGCCCTCGTCTATACCCCTGAAGGAACACAACACACCAGACTTCCACACCTGACTAGGGGCCAAATGGGAGGAGCACCTGAGAGTAACACAGGCCCGTGTCCTAAAAACAACTCTCTCATAAAGAAACCCTTTACCCCTCACAGCCCAGAACAACTCCACCCCACctttcactccttcccctttgaCCCTTCAACTGAGCCTGTGATCTATTCTCCCATTGGCCAATGGACTTCCTCACAATAATACCACACCCACACCCCTAGTGCTAACCAGTCCCATCATCCACTAACAGTATAGCCCTTCTAATCACAGTATTTCTGGGTAAAAAATGCACTTTAAACAAGGCTGTTACCTTCTTGATGTGTTTTATAACAATGCTCCAGTTACAGATTATGataatatgcatatacagtatatatgtgtgtttTGAGATGTTTTTAATCCCTTAAATCTCCTTTGGTTGTTTTTTTTAACGAGGATTCCATCCTGGTCTCCTTCTACACTTTCTCCCCCTCATCCAATCAGGGTACTCCACAGATATGTTACTGTGGAGTACCCAATAAGATTCAAGCAATAGAGATGAGTGCAGAGAGGTTAACTTCCTGTGTAGCCGTTTGTGTTTTAGATTTCTCCAGGGCAATACAGAGCTGCCTCAGCCCTGCATGGAAACGTTCATGTTGTCGTGTTTCTTGTACCGAGCGAATAAAGCTAGACCGATTCAAACTCCCTGACAGACAGGAAATGCCATTCCTGTTATTGGATGCTGCCGGTTGGAGTTGCCCAGAGGCACATTTCTAGGATCAGATTATTCAATAGGGACACAACACAAAACTGACCCTAGATCTGCATCCAGGACAGCTTTATCCTACTCCCTATGGCTGACCACAAGCAGCAAATGACAACGGATCGCCTCACGGAGCAGACACATATGTAGCTACAGAAATTGCTGCCCCTGCGGGAGTGATTAAGCTTGTGAACTGTTTTTCAAAATGCATCCAGTGTAAATAGGAATGCTTAGTACATTTGATCAGCTGATTGATCAATACATATCGGCTAATCGGCCGTGCTTCTTCAATGTTAAACCAATGTTCCCTTCATGTCCAAGGAACATTGAGGACACGCTGCATCATGTTGGTTGTTGATGGGTATCTTTGCTTGCTTTTGTCTTTGTTGTAGCTGCCGTAGGTTTCTACAGTCTTGTTTTTGTACACCCTTTTTAATAAACACTCGATACCAAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593325 lncRNA upstream 35084 55343237 ~ 55343462 (+) True G523464
TU593263 lncRNA upstream 45531 55304241 ~ 55333015 (+) True G523403
TU593086 lncRNA upstream 121177 55251949 ~ 55257369 (+) True G523235
TU592972 lncRNA upstream 242939 55134776 ~ 55135607 (+) True LOC110526162
TU592962 lncRNA upstream 307544 55070659 ~ 55071002 (+) True G523122
TU593396 lncRNA downstream 23619 55471755 ~ 55472673 (+) True G523520
TU593427 lncRNA downstream 58144 55506280 ~ 55506566 (+) True G523549
TU593431 lncRNA downstream 62829 55510965 ~ 55511275 (+) True G523553
TU593549 lncRNA downstream 65080 55513216 ~ 55513437 (+) True G523660
TU593578 lncRNA downstream 87646 55535782 ~ 55536838 (+) True G523689
LOC110526930 mRNA upstream 13804 55351729 ~ 55364742 (+) True LOC110526930
XR_002473894.2 mRNA upstream 242924 55127056 ~ 55135622 (+) False LOC110526162
XR_005052418.1 mRNA upstream 310303 55066200 ~ 55068243 (+) True LOC118965082
XM_036980445.1 mRNA upstream 424068 54920472 ~ 54954478 (+) False LOC110526161
XM_021606837.2 mRNA downstream 115303 55563439 ~ 55568167 (+) False LOC110526167
XM_021606840.2 mRNA downstream 455928 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 455928 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 517086 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 517148 55965284 ~ 55968091 (+) False LOC110526172
TU592296 other upstream 437673 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 437673 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1108287 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 1423416 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2723249 52651940 ~ 52655297 (+) True G519603
TU593407 other downstream 36113 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 115612 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 466207 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 662143 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2127948 57576084 ~ 57581070 (+) True G525645

Expression Profile