RNA id: TU593614



Basic Information


Item Value
RNA id TU593614
length 353
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC110526167
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55563439 ~ 55568167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgctgatgcacaaccaaatttcaaacttgcaccttgtgtattctactattctaactctcaacagtaagttgagaaccTGACTGAGTTAAAAACAATTATATAATGGGCCCAAGTGGCCCTAAGCGACAGCTTATatcgcttatgcctggagccgtCCCTGCTTATAGGATATACTTAGAAATGATTTGCTGTTTTGCACAGCTCTTTCAATTGTACAGTATTTTGTACAACTATTTGTATGGATATTTTATGCCAAGAAAATGGAGTTACCTGGACTTACAGTTTTTATTGAAAAGTGTAGACATTTCGTGCATAATTTATACGGATTTGTTAATtcaatgtattgtgtgtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU593610 lncRNA upstream 4481 55562482 ~ 55562802 (+) True G523721
TU593608 lncRNA upstream 7798 55559169 ~ 55559485 (+) True G523719
TU593598 lncRNA upstream 14173 55552869 ~ 55553110 (+) True G523709
TU593589 lncRNA upstream 20318 55546577 ~ 55546965 (+) True G523700
TU593585 lncRNA upstream 23616 55543400 ~ 55543667 (+) True G523696
TU593647 lncRNA downstream 21705 55589340 ~ 55636958 (+) True G523746
TU593665 lncRNA downstream 50749 55618384 ~ 55620951 (+) True G523763
TU593687 lncRNA downstream 95306 55662941 ~ 55663185 (+) True G523785
TU593688 lncRNA downstream 98175 55665810 ~ 55666017 (+) True G523786
TU593694 lncRNA downstream 112539 55680174 ~ 55680379 (+) True G523792
XM_021606828.2 mRNA upstream 119147 55378546 ~ 55448136 (+) False LOC110526163
XM_021606840.2 mRNA downstream 336429 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 336429 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 397587 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 397649 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 403805 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 784 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 82676 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 626410 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 626410 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1297024 54269925 ~ 54270259 (+) True G521914
TU593827 other downstream 346708 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 542644 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2008449 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 2036473 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 2054213 57621848 ~ 57627619 (+) True fbxo3

Expression Profile