RNA id: XM_021606840.2


Basic Information

Item Value
RNA id XM_021606840.2
length 4398
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110526169
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55904064 ~ 55916081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACATGTTGAAATAGACGTAACCTAATTTAATGGTTGCCAAAATTGAATTGGCTTTATGCCAAGTTTTTGGCAAGATATCTGTGCGGCGTTTAATGTAAACTCGTGGGATCAGGCGTTGTGTGAGTAGTTTCAAATTGTGATGGTTGGCTCTATCCGGTGGGGGGAGTTCTGGGCGTTCTGTACGCGTGAAACTAGGCGGGACAAATGAAATGGTCCTCAAATCAACGTATTTTACTCACTTGGGTAGGACTACAGGGCAAAAGTTATTTTGGCTCTCCTTTTACACCCTTAGTGTGAATTAGCTGATCGTCTGGTTCCGAAATTGCATGGGGACATTGACaacatttccatttttttttcaaGGTATTAGGATTGTTTTGTCAGCCAATAGCAAAGCACACGTTTATCACCAATGCCTTTAGCTGCTTGACTTTGCAAGGGGAAGCAAACAAGAATTTGAGAGGGGCACAAATGTAACCTGTGCTATAGGTTGGAAAATGTCGAGCACTTCACCGGAGTCCCAGTATCTGAGACATACAACTCAAACCACCACCTCTAATCACAAGGGGAATGTCTTTGCAGAGCCACAAGCACTGACAAAAACACCAAGGAAAGCATCTACCCAAGACACTGTGCTAACAGATATTCAATCCAACATGGGACCTCTTATGACCCCAACTAAAGGAAGGGAGACTGGGACTGGTGAGCCTTGGACCCCAACCTCCAATTTGAAAATGCTGATGAGCGCTGCCAGCCCTGAGAtcaggaacagagagaaagagctgtGTATGGACTCTGAGGGAGGGGATGCCATGGACCACGAGcttggagaggaaggggagaaacAGATCAGCAGAAAAGAGAAGAGTCTGGGTTTGCTCTGTCACAAGTTCCTGGCCCGCTACCCTGATTATCCCAACCCTGCCCTCAACAACGACATCAGTCTGGATGATGTTGCCACAGAGCTTAATGTGGAGCGCAGGCGCATCTATGACATCATGAATGTGCTGGAGAGCTTGCACATGGTCAGCCGGCTAGCCAAGAATCGCTACACATGGCACGGGCGCGCTAACCTACCACAGACCCTGGCCAAGTTGCGGCAGGTGGGCGAGGAGCATCGCTACGGGCAACAGATGCAGCAGATCCGCCAGCGCAGCCTGGAAAAGGAGTTGGACTCGGACGGTGAGGAGAAAGAGAacgaggaggtggagggaggagaacagGGCCAGAAGGAGATGTTCTTCGTGGAGCTTCCTGGGGTGGAGTTTAAAGCAGCCTCCGTGAACAGCAGGAAGGACAAGTCTCTGAGGGTGATGAGCCAGAAGTTTGTCATGCTGTTCCTGGTGTCCACACCTCGGGTGGTCAGTTTGGATGTGGCTGCCAGGATCCTCATTGGAGAGGACCAGGTGGCTGATCAGGACAAGAGCAAGTTCAAGACTAAGGTCCGCAGGCTGTATGATATAGCCAACGTGCTGCGGAGCCTGAAGCTGATAGAGAAGGTCCATGTgacagaggagaaagggaggaagccAGCCTTTGAATGGACCGGCCCTGAGGACTTCCCCAGTGTGAAGGAGACCACTGCCACTACAGCGACTGCCAAGAGGAAACTTGAGTCTCGTACCTCCGTAGACAACTGTGCCAAaaatctcttctcctctccgggGAGTAAACGCAGCTTCACCCGCCACCCCTCCCTCATCAAACTGGCCAAGAGCATCCAGGAAGACCGGCGAAAGATCAACTCAGCCCCCACCAGCCCTGTCAAGAATGATTCCTCGAGCAGTGAGTTCTTTCCCACCAAAATGGCCCAACTAGCGGCCATCTGTAAGTTCCAGCTTGACCAGCAATCAAACAAGGTTGTTGACAGGACACCGAAGTCTGCAGTTACTGTGACTGAGGCACTGCCAGCTCATCAACAGAAAGCTGCTAAAAAGCCAGGAGCTCCACAGCCCCCAGTATTAACACCCACAGAAGCCCGTGCCAGCACTGTCCACCTCACCCCACGGGCACAGTTCACCCCCCAACCTACTGGGGCAATGTCCTTCCACCCTGCCCAGTGTTCACCCCTCATCCCTATGCTGCTGCCCCAACACCAGGGAGGCGGTCCCTACGCCATCTACATGCACCCCTCGTCCTTCAAGCCACACCCCCTAACCAGGCCTCAGCCAACCAGCCTCGCTGTGCGCTCTATGACCTTCGAGGATAAGACGGGGCAGAGCCCGAGTGATGTCACAGTGCAAGGCCACTCGTCTGCTACGAACAAGCTGCCAACCAGCAGCCCCTCGGCATTAAAACGTGTGTGTTCAGAGAGAACTTCAGAGGAAAGCCCCTCCAAGGCCAAGAGGATTGACCCTAGCACCAGGgacacGTCTCCTAAGCTGTGTGAGATCCTCCAGGCTCGTCTAAAGGCGCGTCGCGGGGGTCTCGTCTCCAGCCGTCCCTCACCCCGAGCCCTCCACCTGGACCCAGAGTTCGTCAACACCCCTGGGAGCTCAGTGGCCGTCGCAGCCAATCAGACACTGGAGCAGAACCTGGAGACCTTcctggagaaggaggagaaggtcaCAACCTCAGACGGCGAGGCAGGGCTCACGCCGGTCAGAGCTGTTCCACTGAACCCTCAACACCTACACacagagACTCTGATCCCCACTGGCTACCTGATCCCCATCTCCCAGCAGTCACTCTTCAGCTACAAAGACCACAACACAGAGAGCAGCAAAGCCTTCACACCCACCTACAACATTTACCACACACCCACCGCAGgCTCTAGACCTCCCCCGATCCAGGAGTTCACCCCTACCAGCCTCCCCCTCCACAGGCCTCCCCCCTCCTCGCCCTTCTCTGCCCAGGGACACCGCTTCCCCAGCCCTGCCATCCTCAACTTTACCCTGCAGAACCTGGGCCTCATACCTGGGCCTGGCTCTGTGCCCACTTACAGCCCTGGCACTGGCCACACCCCGGAGCACCCCAGCTCCATACCCAGCCCCCTGCCTCCCCACCTGGGCCTGCATCAGAGGGGCGGCATGGTGTTTGTTAAGCCCATGTCCCCCGTGCCAGTCCAACACCAGATGACCGGCCCAGGCGGACAACCACTCACGCTAATCAGCCTACAGCAGatgaccACGCCCAAAGGGACGGCCCTCCCCCAGCACAGTTTCTTCCACACCCCGCTGGCTACCGTGGTAACCACCAGCCATGGACACACGGTGCCAGCGGGCACCAAAACCGTTTACATCCCTCAGCGGAAGCTGGACGTCACCGCTGAGGACACCTAAAGACTATGCTGCTACACaaactttctgtgtgtgtgtgtgtgcgcgtcagcCCTTcaacatgtgtgtgtctgtgcatgtctgCATGGCTTTCTATGGTCCGACTGTCGTATTTTTTAAGGCGTACTGTAGGTTGAGTGGTTTTGTGTTTTAGGGTATGTGATGTCGCTATATGAGTTCATCCAAAACTGGTCCATAGGTTATTCCAGCGTTTCCCACACTCAgtgcacgtttttttttttttttgtgctagTACTACACAACTGATTCCAATTATTAAAGCTTGacgattagttgattatttgaattagctgtgtagtgctagggcaaaaaccaaaacatgcagccCTTGGGGTCCTGAGGACTGAGTTTCAGAAGCCCTGGTTTATTCCATTTCTACAGGGGAAGACAAAGTATGTGAACATGGTGTGGAAACTCCATACAGAAACAGCTGCGAGTCACCATCATCACAGCTAGCTCCATATATAACTGATGGCGAGACCAGCCTTGGTAAATACTCTTAACCCTGGGGCTTGATACACGATATGCTGGATATTACTgtgtaatactataatactacaacatACTTTTGATACTGGTGTATATGTATGGAAATATGATTAGGGCTCACCAGTAGGTATTAAACTGGCGAGGGGTGCTTTCTGTGTCTGAATACTAAATAGTGAAACGGTCTGTCTTTAGGTTTTAAAGGGTTGTTTGCCAAAATGTAATACGCTGGCTGAGTATTTCAACATTTCTCAACGAGAAGTTGTATTGAAGTCCCATTACATCATCAACGTGCCATAGAGAAGAACACCAACCTAACCCCAGTTCACTGGGATGACATTAATACATGACAGCGGAACTTTAATGACTGAAATGTATTGTAGATGAACTGTTTTTGTATGTGCCAAATGGGTAAGACTACAATTTTGCACATTGTACATGCTAACTGTTACCCTTCAAAAGCTGAACTGTATGTGATTGAAATGTAAGGGGTGAATGTTTTTTGATAGGATTCCTACCTTAGGCTAATCAGGTAATTGAAATCAGATCTTAATGCATAAGGAATGGACTTTAAGCACCCTTGTATATAAAATGGTAAACTATTAATATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593823 lncRNA upstream 8737 55895064 ~ 55895327 (+) True G523915
TU593822 lncRNA upstream 10119 55893676 ~ 55893945 (+) True G523914
TU593816 lncRNA upstream 14128 55889697 ~ 55889936 (+) True G523908
TU593812 lncRNA upstream 20863 55882971 ~ 55883201 (+) True G523904
TU593804 lncRNA upstream 34499 55869362 ~ 55869565 (+) True G523896
TU593846 lncRNA downstream 10286 55926367 ~ 55927215 (+) True G523936
TU593851 lncRNA downstream 14647 55930728 ~ 55940668 (+) True G523939
TU593870 lncRNA downstream 49166 55965247 ~ 55968034 (+) False LOC110526172
TU593871 lncRNA downstream 49495 55965576 ~ 55968034 (+) True LOC110526172
TU593874 lncRNA downstream 53357 55969438 ~ 55970160 (+) True G523959
XM_021606837.2 mRNA upstream 335897 55563439 ~ 55568167 (+) False LOC110526167
XM_021606828.2 mRNA upstream 455928 55378546 ~ 55448136 (+) False LOC110526163
XR_002473897.2 mRNA downstream 49141 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 49203 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 55359 55971440 ~ 55980904 (+) False LOC110526171
XM_036980460.1 mRNA downstream 55359 55971440 ~ 55980904 (+) False LOC110526171
XM_036980461.1 mRNA downstream 55359 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 337565 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 419457 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 963191 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 963191 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1633805 54269925 ~ 54270259 (+) True G521914
TU593913 other downstream 194198 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1660003 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1688027 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1705767 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1723393 57639474 ~ 57642482 (+) True LOC110526214

Expression Profile