RNA id: TU593827


Basic Information

Item Value
RNA id TU593827
length 1245
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC110526169
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55904064 ~ 55916081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGCACTGGCCACACCCCGGAGCACCCCAGCTCCATACCCAGCCCCCTGCCTCCCCACCTGGGCCTGCATCAGAGGGGCGGCATGGTGTTTGTTAAGCCCATGTCCCCCGTGCCAGTCCAACACCAGATGACCGGCCCAGGCGGACAACCACTCACGCTAATCAGCCTACAGCAGatgaccACGCCCAAAGGGACGGCCCTCCCCCAGCACAGTTTCTTCCACACCCCGCTGGCTACCGTGGTAACCACCAGCCATGGACACACGGTGCCAGCGGGCACCAAAACCGTTTACATCCCTCAGCGGAAGCTGGACGTCACCGCTGAGGACACCTAAAGACTATGCTGCTACACaaactttctgtgtgtgtgtgtgtgcgcgtcagcCCTTcaacatgtgtgtgtctgtgcatgtctgCATGGCTTTCTATGGTCCGACTGTCGTATTTTTTAAGGCGTACTGTAGGTTGAGTGGTTTTGTGTTTTAGGGTATGTGATGTCGCTATATGAGTTCATCCAAAACTGGTCCATAGGTTATTCCAGCGTTTCCCACACTCAgtgcacgtttttttttttttttgtgctagggcaaaaaccaaaacatgcagccCTTGGGGTCCTGAGGACTGAGTTTCAGAAGCCCTGGTTTATTCCATTTCTACAGGGGAAGACAAAGTATGTGAACATGGTGTGGAAACTCCATACAGAAACAGCTGCGAGTCACCATCATCACAGCTAGCTCCATATATAACTGATGGCGAGACCAGCCTTGGTAAATACTCTTAACCCTGGGGCTTGATACACGATATGCTGGATATTACTgtgtaatactataatactacaacatACTTTTGATACTGGTGTATATGTATGGAAATATGATTAGGGCTCACCAGTAGGTATTAAACTGGCGAGGGGTGCTTTCTGTGTCTGAATACTAAATAGTGAAACGGTCTGTCTTTAGGTTTTAAAGGGTTGTTTGCCAAAATGTAATACGCTGGCTGAGTATTTCAACATTTCTCAACGAGAAGTTGTATTGAAGTCCCATTACATCATCAACGTGCCATAGAGAAGAACACCAACCTAACCCCAGTTCACTGGGATGACATTAATACATGACAGCGGAACTTTAATGACTGAAATGTATTGTAGATGAACTGTTTTTGTATGTGCCAAATGGGTAAGACTACAATTTTGCACATTGTACATGCTAACTGTTACCCTTCAAAAGCTGAACTGTATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593823 lncRNA upstream 19016 55895064 ~ 55895327 (+) True G523915
TU593822 lncRNA upstream 20398 55893676 ~ 55893945 (+) True G523914
TU593816 lncRNA upstream 24407 55889697 ~ 55889936 (+) True G523908
TU593812 lncRNA upstream 31142 55882971 ~ 55883201 (+) True G523904
TU593804 lncRNA upstream 44778 55869362 ~ 55869565 (+) True G523896
TU593846 lncRNA downstream 10421 55926367 ~ 55927215 (+) True G523936
TU593851 lncRNA downstream 14782 55930728 ~ 55940668 (+) True G523939
TU593870 lncRNA downstream 49301 55965247 ~ 55968034 (+) False LOC110526172
TU593871 lncRNA downstream 49630 55965576 ~ 55968034 (+) True LOC110526172
TU593874 lncRNA downstream 53492 55969438 ~ 55970160 (+) True G523959
XM_021606837.2 mRNA upstream 346176 55563439 ~ 55568167 (+) False LOC110526167
XM_021606828.2 mRNA upstream 466207 55378546 ~ 55448136 (+) False LOC110526163
XR_002473897.2 mRNA downstream 49276 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 49338 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 55494 55971440 ~ 55980904 (+) False LOC110526171
XM_036980460.1 mRNA downstream 55494 55971440 ~ 55980904 (+) False LOC110526171
XM_036980461.1 mRNA downstream 55494 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 347844 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 429736 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 973470 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 973470 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1644084 54269925 ~ 54270259 (+) True G521914
TU593913 other downstream 194333 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1660138 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1688162 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1705902 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1723528 57639474 ~ 57642482 (+) True LOC110526214

Expression Profile