RNA id: XR_005052166.1


Basic Information

Item Value
RNA id XR_005052166.1
length 1443
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110526172
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55965222 ~ 55968091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccctgttttcagAAGAAGACTGtaggaggaagtggagaggacTCAGGGAcaggtatcagagagagagaagggtagagaaagagaagaggtctGGGTCAGCAGCTTCAGGCCAGCAGCCTTGGCGCTTCTGCCACATTCTTTCTTTTCTGGATCCATTTATTGTGCCTAGGGCAACGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTTGCCACCGGTGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACTGGTGGAGTGAGACCCTCTACAACATCATCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGATGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATTATTATGAACCTCACGGAAGTGACCACCTCGTTGAACAGGATGCGGCcgtggagagaaacagagagaaactaaGAGGAACAACGTCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCACTCAACTCATTTCAGCAGAGGCTCCTCCAAGCCGTCGAGAGGGATGCAGCCCAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTGCCATGAGCCTGGTGCCAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAGCAGTCAAGGTTAAAATGGATCAACTGCTTTTCGAAGCCGAGTTCAATgAAATGGAGTCAATTTAGCTGACCAGCTCacaggaaggacaggaagaggagaggagttgtcTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCCGtttaaattcagtcaattcaTAAAGTAATTTGTTTATAAAGTCTTAGGATAGCATTCATTATTAGTGTTACATAGATTTCTGAATTGAAACTCATACGGAGTTTTCACAGATGCTCTTGGTCTCTTACGAGACTATAGGTCAATATATTTCTTTAATTTAAAACCACTTGAAAACCAGGGTGTTGAAACTTTTTGTGAAGTTATGTTCCATCGACTGGTCCGTGACGTCCAGGGGTCATTTGTTTGTTTAGCTGTGTTATGGCTACATATTATTCCCTTtttctcagagacagagacacacacacacctcttcgtACCTCAGATCTCCAGTGCCCTGCCCTCTCTCTTTATGGCCATGTCTGAATTTCCTCTACTATGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTAcacattcattaaaaaaaaatgtttttaattacatgcacgcacacacctcTTTCACtagttttatttttaaaaacatttttacaacACACATACCTGTCATGTTCTTTCCTGTACTTGAATACTTATTAAATTATAATGTTTTCATAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593851 lncRNA upstream 24616 55930728 ~ 55940668 (+) True G523939
TU593846 lncRNA upstream 38069 55926367 ~ 55927215 (+) True G523936
TU593823 lncRNA upstream 69957 55895064 ~ 55895327 (+) True G523915
TU593822 lncRNA upstream 71339 55893676 ~ 55893945 (+) True G523914
TU593816 lncRNA upstream 75348 55889697 ~ 55889936 (+) True G523908
TU593874 lncRNA downstream 1347 55969438 ~ 55970160 (+) True G523959
TU593877 lncRNA downstream 7161 55975252 ~ 55979726 (+) False LOC110526171
TU593878 lncRNA downstream 10128 55978219 ~ 55979726 (+) True LOC110526171
TU593879 lncRNA downstream 21103 55989194 ~ 55990919 (+) True LOC110526173
TU593995 lncRNA downstream 159428 56127519 ~ 56127821 (+) True G524069
XM_021606840.2 mRNA upstream 49203 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA upstream 49203 55904064 ~ 55916081 (+) False LOC110526169
XM_021606837.2 mRNA upstream 397117 55563439 ~ 55568167 (+) False LOC110526167
XM_021606832.2 mRNA upstream 517148 55428277 ~ 55448136 (+) False LOC110526163
XM_036980459.1 mRNA downstream 3349 55971440 ~ 55980904 (+) False LOC110526171
XM_036980460.1 mRNA downstream 3349 55971440 ~ 55980904 (+) False LOC110526171
XM_036980461.1 mRNA downstream 3349 55971440 ~ 55980904 (+) False LOC110526171
XR_005052165.1 mRNA downstream 3349 55971440 ~ 55980904 (+) False LOC110526171
XR_005052164.1 mRNA downstream 7136 55975227 ~ 55980904 (+) False LOC110526171
TU593827 other upstream 49338 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 398785 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 480677 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 1024411 54879699 ~ 54940873 (+) False LOC110526161
TU593913 other downstream 142188 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1607993 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1636017 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1653757 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1671383 57639474 ~ 57642482 (+) True LOC110526214

Expression Profile