RNA id: XR_005052165.1


Basic Information

Item Value
RNA id XR_005052165.1
length 2370
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC110526171
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55971440 ~ 55980904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGCGGAAAAGAAAGCTCGTTTACGCAGAACCACTGCATGTCTACGTTTTTTTGTAACTAAGATTTTAGCCAAGTGTTTAGAATGATTTTCTAATTCCTCGATACGCAGCGTCGAACTCAAAACATTCAGTTTACATTTTCGGAATAAGCTAACCAGTTACCCACCTGGAAGTACTTTGTCGTAGGAACAACTTTTTTTCTAATTCCAAACTATCGTATGGAAGGTTTAGGGGTACCTGCAAAATCAAGATCAAGATGTTTTCATTAGGACAAATGCACACTGGACTGCAGTGCTTTTCTATCTGTTGCAGCATTCAACGTTGCACATTTCTGTAGACTTCAGGAAGAACATGCTTTTATATATAAACATCAAATAATTTTCAAAAGATCCTCTGCTTGAAACAATTACGGGATGTGAAGTCTGATTCTGTCCTCAACTTGTTGACCTGCTCTGAGGATGTTGGACACCACTGTTGCACCTTCAGTCATTACTTTTTTTCATGTCAGTCGATGGGCTGACTGACCTCAAGGCGCAGAAGGTGTTTTAAGGTATAGGAGGAGGTCTGGTGCAGTGGGGTGTTCCAGGTCCGCAACACTTGAGGAGAAAACGTCTTAATCATGATGGTCCTCTGCTTGCCATACTAGAGAGACACACTCTGTTTCCGTCCTCAACTTGCGGACCTGCCCTGAGGATGTTATACACCACTGTTGCGCCTTCAGTCATGTTGATTTCCGTCTGGTTGTCTTTGGACTACATGCCATGGGCTGACTGacctgaacagaaatacaatgttcATCACTTTCCTCATACTGGACTACTCTGATTAGTTATGAGGTCACAGGAAATAGACTCATTACTCATAAATCATTGCAGCTCACTTGACTGCATCTGACTGTGGATAGCAGAGCTCTCTGGTGTTTCACCATTTGAAAttaaacaacaaaaatgtaaattaccATTGTTTTACACTTCTGACATATCACAGCAGTAAGTAGTATCCTACCTGACTCATATAAACAACATCCTTGAGTGTTTTGTTGATTAATGTATCTTTATAAGATTGTATTCCTTTTTTACCTGTAAAAAACCTGTAGACATGCATGATCCTGTAAATATTTACAAGGAACATAAATCTCACTACTTGGTATTTTTATATGGGGATtgtgaaaaatatatttaatgtagTTTTGTATGGTAATTGTAAATCAAATTTGTTTTCATTGGACTAGTCCATAAGATTTGTGTTAGGATTTGTTTGTTCTTAATTATGCAACCTTTTTTGTCCAATTATCTCCACGTAATACAGCCAGCTTTtccattcttggttatctgcctCTGTAGCCTTTATCTAAAGTTTCATTTTTTGTATTACTTTGTTATTTTTATTGCTACTCTCTTCACATGGAGATGTTAGTTATGGGATGATGATTCCAATTTGGCAACAGGTGCTAGGATAGTTGGGATTAAATAAGTATTGTTACGGAAATACAAAATGTCAATATcggtcccactttaaaccaagtACAAGTACTCCATtcacaaatcatctataagtGTTTGTCATACTCTATGAAGGGTTACATACCCATTTCCACTGTAGAGTGAATTGCCAACTGTGACATAACTCAATATGTATGTTCACACACCATCTGTAGAGTATGACATATGGTTATAGACTATTTGTGAagtgtttatgtagtgtttatgaatGCTATTTAATGCCTTTATAAGTTGTACCTAAAAGTATAAATACTAGTATTAATAGactattattttatttgtttggTGTATTAAGTGAGCTAGCACGTGTATTATGGCATTTAGGTGTTATGGATAATAGCTCTGGATGAGAGGTCGAGCCATAACAAAGTAAACACTGTTGCCTCCAGTACGATAGGTGGCGATATTGCACTGTTTATCTTGACTGCAAAACAAAGAAGCAGATGCAAATGTCCAATCTGGAATATCATGGGTCATGTGCTGCATACGTGGAGTGTCTGAAAGTGGGCGTGTCAACAAAAGTGGGTGTATGGAAACCAATCAGCTAATTGGGCAGATTTGTTGCCACTTGACCATTTTGTGTGTGGGCTGCACAACAAGTAGATTGTTGACAACCATAGCATTTTAGCTATCCTTAATAACCTCATTCtactaacctgccacgttaattatcctaacctgctaccttCTTCTTTGGAATTTGTTTGGCAGATCGCATCCACCTTTTAAGTGCATACACCGCCAactactgtactggtgtgtgtgAGGCAATTTACAGTCTAACTACATTACATTCTTTGATATGGTAATACAAAATTGTGAAAAAGGAACATTTCCCTCCCAACTATTAACCCtctcaaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593874 lncRNA upstream 1280 55969438 ~ 55970160 (+) True G523959
TU593870 lncRNA upstream 3406 55965247 ~ 55968034 (+) False LOC110526172
TU593871 lncRNA upstream 3406 55965576 ~ 55968034 (+) True LOC110526172
TU593851 lncRNA upstream 30772 55930728 ~ 55940668 (+) True G523939
TU593846 lncRNA upstream 44225 55926367 ~ 55927215 (+) True G523936
TU593879 lncRNA downstream 8290 55989194 ~ 55990919 (+) True LOC110526173
TU593995 lncRNA downstream 146615 56127519 ~ 56127821 (+) True G524069
TU593999 lncRNA downstream 159025 56139929 ~ 56140478 (+) True G524073
TU594000 lncRNA downstream 159792 56140696 ~ 56142206 (+) True G524074
TU594032 lncRNA downstream 227374 56208278 ~ 56229652 (+) True LOC110526177
XR_002473897.2 mRNA upstream 3349 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA upstream 3349 55965284 ~ 55968091 (+) False LOC110526172
XM_021606840.2 mRNA upstream 55359 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA upstream 55359 55904064 ~ 55916081 (+) False LOC110526169
XM_021606837.2 mRNA upstream 403273 55563439 ~ 55568167 (+) False LOC110526167
XR_005052167.1 mRNA downstream 1366 55982270 ~ 55989454 (+) False LOC110526173
XM_036980463.1 mRNA downstream 1508 55982412 ~ 55989454 (+) False LOC110526173
XM_036980464.1 mRNA downstream 1508 55982412 ~ 55989454 (+) False LOC110526173
XM_021606851.2 mRNA downstream 39721 56020625 ~ 56120747 (+) False LOC110526175
XM_036980465.1 mRNA downstream 55775 56036679 ~ 56120747 (+) False LOC110526175
TU593827 other upstream 55494 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 404941 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 486833 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 1030567 54879699 ~ 54940873 (+) False LOC110526161
TU593913 other downstream 129375 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1595180 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1623204 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1640944 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1658570 57639474 ~ 57642482 (+) True LOC110526214

Expression Profile