RNA id: XM_036980465.1


Basic Information

Item Value
RNA id XM_036980465.1
length 2903
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110526175
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56020625 ~ 56120747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGAAATAGTGTGAGTGAATGAGAGACAgtaagcgagagaaagagagggagggagggtggaagggagagggagagcgagagggagctgGACGGTTGCTATAACACTGcagtctttttttcttcttccctcATCCAAGgaaggtgtctctctctcttcttctggaAATGACCCTGGCAGATACTTCACTCTAGTTACCCAcctagagaggaagaggagaaaacaAACAAAAGGGGTGcacagaagggagggagagaagaggagagggaaccTGAATGCAATGCTCTACTGGCTGGACTGTGAAACTGATAtacagaaagggagggagacagaggtgaAGAAGGAGCGAGGGAGTGAGGCAAGTAGCAGGTAGACCTGCGAAACAGCAGCTGCGGGAAGGGGAACAGAGGAAAAGCAGAAAGGGGGAgttagagaagagaaagagagaacgaacCAGGACGAACAGGAAAACCAGGCAAGGAAAGTGGTAGAGCGCTCACCTAAAGGAAACCAATGAATTCTCTCCTCATTTCAGTTACCTATCCTTTTCTCACGTATCTTTTCCTTTCACTCATCCCCACGCATTCACCTCAGTGTTGTCTCCTGGTCTGCACATCTTCTCTCCTTTTAACTTTTCTGCATGTGAGGGAAAGTGGAGCCAAGACAATGGACACTGGGGAACATTCAGAATCAATTCCAACTGGATGTAGTACTAGCGTGCGGTCTTAATGGAGAAGTGGTTCTGGTGTAAAAGAGACTGATTGGCTAaaaccctgttgttgttgtcaagAGTGACTGTTTTCTCTGCCAGAGCGCACCTGCTCCGGAATTTCTAATGGCACCAGGTGTGACGTATCACTCAGCCAACCGATCAGATGAGAGCAGTTCTGGAAGTGCCAAGCGCTCTTGCAATTATGTGTGTCCGATTCACCTGAGATTAGCAGGAATTGGAAAAACTAGAGCTTCTTTGTGATAGACAAGTGTAGTTGTGGGATTCAGGAAAGGAACATATAATGAACAGGTGTTGTAGGATTAAGCAACGTTAAAACGGGAATATACAGGTGTAGGATTACGAATGAAGGCACTCTGGATAACCACAGATGACAAGACATCGTCCACAGACGAATTTGAGGTGATGTGTTTTAATCTTAGCTGGTCTATCACTGCAGGGGCACAGTTGGACTGCATGCCTAATCACGCTTCAGTTTCTGTGGTGAAAACACTGTAGGCTGGTTTGCTTAGAAACTATTGGGAACAGGTGCTATTCCACATTACTGGCACCACAACTATGCACATTTGTCCCCTGAGGACACGCTATTTGTACTTTGTGTCTCTGTATAGGTCTTAAGTGACTTTTTTTTGTGTGGGCTCTCAAAGACCTCTTGAAGCTCTTGAGGGGGTTGAAATAAAACTTTGGCTGTTGCTAGCGTCTCACCTCTGGTTGGTCCATGAGGCGCTCGAGCACGGACGAGACGCCGTACCGGCGCAGTCCCTCACTGGACAGCAAGCCCGAGACGCCACCCTTCAACTCGGGTTTCCACAGCTACAGTGGCGAGTACGAGTATAAACGTCCGCCCTTTGCATTCGGCTTCCACACGGCGCCGGGTCCGCAGGCGGCTAAAGGCCGCTACACCACCTCGCAGGGGAAGAAGTATGTGGTGTTTTACCTGGACCTCTCCTTCATCTTCCTCCTAGAGCTGCGGCGCTGCAGGATGGCTGAGGGCTGCATGAGGAGCCTGCGCTACGGTATGGTCTTCTTCAACCTCCTCTTCTGGTTGGGGGGTTGTGGAATACTGGGCGTGGGGGTATGGCTGTCAGTGACCCAGGGCAACTTTGCCAcactctcctcatccctcccatccctctcagCAGCCAATCTACTCATTGCGGTCGGGACCATCATCATGGTGATTGGTTGCCTCGGCTGTGTCGGAGCTGTCAAAGAAAGTCGTCCGCTATTGCTGAGTGTTGATCACTATGCCCAGAGGGATTTGAAGAGGGGACTCCAGCTCTTTGGCACCGAAGGCAACGTAGGCTTGACCAACGCCTGGATGATCGTACAAACTGATTTCCGCTGCTGTGGCGTGACCAACCATACGGACTGGTTTGAGGTGTACAATGCCAGCCGTGTGCCCGATTCCTGCTGTCTGGAGTACAGCGACAACTGTGGCCTCGTGAACCCAGGGACCTGGTGGACCGCGCCATGTTACGAGCGGGTGAAGGATTGGATACAACAGAATCTGGTGGCCCTGTGGATATTTGCCTTGTGTACGGCactcacacagATTCTGGGTTTGGTCTTCTCTATGACGATGTTCTGCCAAGCAGTCAAAGTGGAGACCTTCTACGCCTAGCAGCGTCCCCTCTTTGCCCCAAAGGACTCTGTGAATGAGTgaggcacacacctctctctctctctctctactctgtgacGGACCTTTCTCACCAACGACTCGCCGACCAATCCTCATGTAACATCTTCACAACGACCTGTACTGTAAAACAAGCACAATGTACTATCGGGAGCCAGTGGATAGTTTTTTTGCTGAATTAAATGTTATTCGCTCATTTTGTGGTCAacatatatatgtaatatataggAGTAATCCTTTTTTAAAGATATGTTTTCAATGATTTTGAATCATTCTATAACCGTAAATGTttttgaaaggagaggagagctaaGGAATGCAGGTCAAGAGTGCATTTATTAAGACAGGCCATATGAGTAGTAAAGTGCATGGCTCTTATAATGGTGTTAGTAAATGTTTGGCTCATCCAAATCAACTTTTCCTTGAGTTTCTTTTTTTATTCTAACGTCAAGAAATACTGTAAATTATAGTGCATTGTAACAGTGAATTCATAATGATACTTATTTAATAAACGAGTTCATCTGTAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593879 lncRNA upstream 45760 55989194 ~ 55990919 (+) True LOC110526173
TU593877 lncRNA upstream 56953 55975252 ~ 55979726 (+) False LOC110526171
TU593878 lncRNA upstream 56953 55978219 ~ 55979726 (+) True LOC110526171
TU593874 lncRNA upstream 66519 55969438 ~ 55970160 (+) True G523959
TU593871 lncRNA upstream 68645 55965576 ~ 55968034 (+) True LOC110526172
TU593995 lncRNA downstream 6772 56127519 ~ 56127821 (+) True G524069
TU593999 lncRNA downstream 19182 56139929 ~ 56140478 (+) True G524073
TU594000 lncRNA downstream 19949 56140696 ~ 56142206 (+) True G524074
TU594032 lncRNA downstream 87531 56208278 ~ 56229652 (+) True LOC110526177
TU594074 lncRNA downstream 157501 56278248 ~ 56281973 (+) True G524139
XR_005052167.1 mRNA upstream 47225 55982270 ~ 55989454 (+) False LOC110526173
XM_036980463.1 mRNA upstream 47225 55982412 ~ 55989454 (+) False LOC110526173
XM_036980464.1 mRNA upstream 47225 55982412 ~ 55989454 (+) False LOC110526173
XR_005052165.1 mRNA upstream 55775 55971440 ~ 55980904 (+) False LOC110526171
XM_021606855.2 mRNA downstream 64385 56185132 ~ 56234100 (+) False LOC110526177
LOC110525039 mRNA downstream 200956 56321703 ~ 56328003 (+) True LOC110525039
NM_001159338.1 mRNA downstream 211958 56332705 ~ 56355234 (+) False nr1h3
XM_036979135.1 mRNA downstream 211972 56332719 ~ 56357492 (+) False nr1h3
XM_021604940.2 mRNA downstream 211983 56332730 ~ 56357492 (+) False nr1h3
TU593827 other upstream 120733 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 470180 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 552072 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 1095806 54879699 ~ 54940873 (+) False LOC110526161
TU595721 other downstream 1455337 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1483361 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1501101 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1518727 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1582711 57703458 ~ 57710340 (+) True G525912

Expression Profile