RNA id: XM_021606897.2


Basic Information

Item Value
RNA id XM_021606897.2
length 2522
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110526184
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56553850 ~ 56562955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCTTTCCTAGCctattgttccctctctctcatacgcTGGCTGTTTCACTGAGAGATCTCACTGCATTCCGCACACCTGTTAGCTGTAACCATCTGACCAAGCACCAGAAAAAGAACAGGAACGAGAGACGGGATATGGATCTTTACGCAATCATCAGTGCTGTTTTGCTTCTGCAACTGCAAGGTTTTCATGTGGCCTTGCTCCAGGCACCAACAGACTCTCCAGGACAAACGATTGATCAAAGTTGGCTTCGTCAATTGGTCAAATCCAAGCTAAACAAGACAACAtcacaagctcagtccaatgacaTTGTTGATATGACAATGGAGGGTACTGAGTCAACAGATGACTCTGAAGGGGTTATCGCAAATGGCTCTGTGTCATTTAGTGGGGAACAGGACAACGTCCAGGACACAAATGAGACTTCAGGTGGTGTGACAATTGGCACCACAATGCCACCAGGGTTGCCAAATGCTACAGCAGAGGAACCTCCAGAAACCACTGTTGCACCAGAACCCCCAGTGAGTGTTGCCTTAAACTCAAGCCAAGTTTCCAATGCAACCGGAGAGGACAGTGGATTCCAAAATGCCACCACTACTGCAATCACAGAAAACTCAAATGGCTCTAATTCCATGTCCAATTACACTGAATTAAATGAGACAACCACAGCTCCAGACACCAATAGCACAGAGCAGATTGGTCCAGATCATCCTGGTGCTGAGAACAGGGTAACCAACAGTACAGAGGACTTCCATAATGTAACGACTGCAGTACCAGAGCCATCCAGTGAACCATCCACAGCTTCCCCCTCCACAAAGCTTCCCTTGGACTCCCCTGGGACTACAACTGCCAAAATCACCCCAGAAACTACAACAACCACAGGTCCCAGCACAATAACAGCCATGATGAAAACTGGTGCCGCTTCAGGAAGCAACTCTGCGAGAGGCTTGGACTCAGATGCAGTGCAGAACAGGAAGAGGAGTGAGGCATGGGCTGCCATCCTGGGCATAGGAGTGGCAGTGTGCTTCGTGGCGATGGTGGTCTACGTCATCCTGAGAAGGAGAGACCGACGGGATTTCACACACAGGAAGCTTGTTGAGGAAATCCCCTCAGACCCAGTTCAACGACTGAACAACCCTGAGCCCGTGGACTTGAAATATGATGGTTCCGCCTACTACAATCGTGGACTCCAAATGGACAATATCCCAATGGACCACTTTCCACACGGACATCAAAATTGAGAAGGACTCCAAGACTAACCTTAAACACTTTAAAGGAGACTTTCATATACAAAATACTTATTGAGACCCGACATACGCATTAACGTGCATAAGTCTCTATAGCAGAATGTCAAGTCATGGATTTACTGCACCCTAATGCATTGGTTATGTGGGTTTAGAGCCAAATTTGCGGTgtcatttttttgtacatttttccAAATTCCAGGTAACTTTGAGAATTTGGAAATGTGTTAGGAATCTATTATTATTTTGGAACATTTGAATAATATTTTTATATGTTTTTatttctaaaattacattggttTGGAAGGAAAGTTTTTAAATTTGCTGGAAATATTTCCATTCTTTGTTACGCCTAGGATGCATACTACCTTTACATAACTTAGACTTCCACATAATTATCGCATTGATCTCAATGGGAGGAAACGTCATGCATGGATCTCAATTTAGGAGTCTAGACACTCCAGCACAGTCTATTATAGAAGTACTAAAAGCCAAAAATGAAGTCTTAATTGTCTGCTATATTTCCAAGATGGTTCGACAAAGGTAATTAAACATTTCTTAGACATGAAGACCTACACTCAAATAAGGTTATTTTTGTACCTTACTCTAAATGACAATTTAGCCAGAGGTCATCTCAATATAAacataaatgtttgatttttatttaacctttatttaactaggcaagtcagttaagatatATACTTCAAGAATCatgtccataattattggcacccttgataaagatgagcaaaaaagactgtataaaatcaAAATATCAAATTCTGAGCTATATTGCATAAATCAATGGGGAAATtagattattttatactaatacaattgctcagagaaagagattttgtttaaaaagtaataaaaatacatctaaaaaagctagcagggcagcaggtagcctagcggtttagagtgttggaccaatAACTGAAAGGTCGTTGGTTTGAATCTCCATGCTGACTAGGTAAAAAAAGGTGTTGATCTGCCCTTGGGCAAGGCCCTTATAGCTCctataagtcactctggataaagtgtctactaaatgactaaaatatagaTAGGgttcaaaatgattggcacccctgttttcaaaaCTCTAGCACCCTCCCGTAATGAGTATAATGACACCCTTtttcccagtggtgtaaagtacttaagtaaaaaatacttgaagtactacttaagtcattttggggggtatctgtactttactatttatatttttttaatacttttacttttacttcactatattcctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594173 lncRNA upstream 228680 56324937 ~ 56325170 (+) True G524199
TU594074 lncRNA upstream 271877 56278248 ~ 56281973 (+) True G524139
TU594032 lncRNA upstream 324198 56208278 ~ 56229652 (+) True LOC110526177
TU594000 lncRNA upstream 411644 56140696 ~ 56142206 (+) True G524074
TU593999 lncRNA upstream 413372 56139929 ~ 56140478 (+) True G524073
TU594293 lncRNA downstream 21321 56584276 ~ 56589481 (+) True G524303
TU594362 lncRNA downstream 114154 56677109 ~ 56756337 (+) True G524371
TU594512 lncRNA downstream 325594 56888549 ~ 56889643 (+) True G524519
TU594514 lncRNA downstream 329431 56892386 ~ 56892635 (+) True G524521
TU594462 lncRNA downstream 330290 56893245 ~ 56895396 (+) True G524469
XM_036980467.1 mRNA upstream 107985 56362031 ~ 56445865 (+) False LOC110526181
XM_036980470.1 mRNA upstream 107985 56362053 ~ 56445865 (+) False LOC110526181
XM_036980478.1 mRNA upstream 107985 56362053 ~ 56445865 (+) False LOC110526181
XM_021606866.2 mRNA upstream 107985 56362054 ~ 56445865 (+) False LOC110526181
XM_021606891.2 mRNA upstream 107985 56362054 ~ 56445865 (+) False LOC110526181
XM_021606939.2 mRNA downstream 383399 56946354 ~ 56951411 (+) False ptpmt1
XM_021606938.2 mRNA downstream 384601 56947556 ~ 56951411 (+) True ptpmt1
XM_021606942.2 mRNA downstream 391179 56954134 ~ 56960155 (+) True ndufs3
XM_036980546.1 mRNA downstream 525792 57088747 ~ 57196089 (+) False LOC110526195
XM_036980547.1 mRNA downstream 531857 57094812 ~ 57181107 (+) False LOC110526195
TU593913 other upstream 433116 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 637904 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 987351 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1069243 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 1612977 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 1013129 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1041153 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1058893 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1076519 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1140503 57703458 ~ 57710340 (+) True G525912

Expression Profile