RNA id: XM_021606942.2



Basic Information


Item Value
RNA id XM_021606942.2
length 986
RNA type mRNA
GC content 0.48
exon number 7
gene id ndufs3
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56954134 ~ 56960155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttacatccggtgaaatatctgtctcgttCTATCTGTGCGTTTAAACTACCCAGcattataaaaaaaacagaagaaGAACATTGCCAACGTCATTGAAAAAACATGGCGGCATCGTTAGTGCGTTTTGTTCGCGGAGGTTTTAGCAGGACTTTGAATCTTGCCAATCGAAGCCCATGTCTCATGCAAGCGAGATCCGAGACTACTGAAACAAAACCCACTGTTAGACCCAAGGATGCGGTCACCCATAACCAACTTGCAGCTTTTGGAGAATATGTGGCTGAAATGCTTCCTAAATATGTGCAGCAAGTCCAGGTGACATGTTACAATGAGTTGGAGGTGATGATCCATCCTGACGGGGTCATCCCTGTGTTGACCTTTCTGAGAGACCACAGCAACGCTCAGTTCCGAAACATGATTGACCTTACTGCAGTTGACATTCCCACCCGCCAGAATCGCTTTGAGATTGTGTACAACCTGCTCTCCCTGCGCTACAACTCCCGGATCCGTTTGAAGACCTACACCGACGAGCTCACCCCAGTAgactcctctgtgtctgtccacaACGCAGCCAACTGGTACGAGAGGGAGGTGTGGGACATGTATGGAGTTTTCTTCGCCAACCACCCTGACCTGAGACGTATTCTGACAGATTATGGGTTTGAGGGGCATCCGTTTAGGAAGGACTTCCCACTGTCAGGATTTGTGGAGGTGCGTTATGATGATGAGGTGAAGCGCGTGGTGGCAGAGCCTGTGGAGCTCTCACAGGAGTTTCGTAAGTTTGACCTGAACAGTCCGTGGGAGGTGTTCCCAGCCCACCGTGAGGCCAAGGCACCTGAGCTACCAGCTGGGGATAAGCCAGCTGACAAGTAACCATCTACCGAGAGATAAAATCCCCGTATTTAATATTTCCGTACTGTTGATGGACTCATGTCCCACTTGAGTCCACTCAAGTATTTatgtaaataaaaacaaaagcTAAACCGTT

Function


GO: NA

KEGG:

id description
K03936 NDUFS3; NADH dehydrogenase (ubiquinone) Fe-S protein 3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU594465 lncRNA upstream 47740 56906153 ~ 56906394 (+) True G524472
TU594463 lncRNA upstream 53880 56899979 ~ 56900254 (+) True G524470
TU594466 lncRNA upstream 54714 56899176 ~ 56899420 (+) True G524473
TU594462 lncRNA upstream 58738 56893245 ~ 56895396 (+) True G524469
TU594514 lncRNA upstream 61499 56892386 ~ 56892635 (+) True G524521
TU594550 lncRNA downstream 608 56960763 ~ 56972189 (+) True G524555
TU594574 lncRNA downstream 30388 56990543 ~ 56993453 (+) True G524577
TU595666 lncRNA downstream 149365 57109520 ~ 57109750 (+) True G525590
TU595671 lncRNA downstream 153819 57113974 ~ 57114230 (+) True G525595
TU595674 lncRNA downstream 164428 57124583 ~ 57124805 (+) True G525598
XM_021606939.2 mRNA upstream 2723 56946354 ~ 56951411 (+) False ptpmt1
XM_021606938.2 mRNA upstream 2723 56947556 ~ 56951411 (+) True ptpmt1
XM_021606897.2 mRNA upstream 391179 56553850 ~ 56562955 (+) False LOC110526184
XM_036980495.1 mRNA upstream 391179 56553862 ~ 56562955 (+) True LOC110526184
XM_036980489.1 mRNA upstream 508269 56362055 ~ 56445865 (+) False LOC110526181
XM_036980546.1 mRNA downstream 128592 57088747 ~ 57196089 (+) False LOC110526195
XM_036980547.1 mRNA downstream 134657 57094812 ~ 57181107 (+) False LOC110526195
XM_021606948.2 mRNA downstream 134662 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA downstream 134738 57094893 ~ 57196089 (+) True LOC110526195
XM_021606949.2 mRNA downstream 301913 57262068 ~ 57277274 (+) True LOC110526197
TU593913 other upstream 833400 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1038188 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1387635 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1469527 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2013261 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 615929 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 643953 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 661693 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 679319 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 743303 57703458 ~ 57710340 (+) True G525912

Expression Profile