RNA id: XM_036980546.1


Basic Information

Item Value
RNA id XM_036980546.1
length 7302
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110526195
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57088747 ~ 57196089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTCGAAAGAGGCGAAGTGGTAGGAACCGGTGGCGATGAGGATCATAGTTAGCAAATCACTGTTATCACATTCTCCAGCACAAAATATGAATTTGAAAGGGTAAGGACATTATTGGTTTTACAATATGTACACTATTTGCAACCAATGTTCGCGAAATCTAGACATCCAGAGCTTTGCTAGGCGTCACATTGAGCTCTTTACGCTATCCGGTTTGAACACCCGGTTACTGAACGTCTTGACCTCAATTATTTCTGGTACATTTACACAGCAGTAGCTGACCAATAGTATTTGCATTCCACTCAAATTCGGATATAACATGTATTTGTAACAGGCGAAGCGGTAGATATGTGCCCATATTTGGCTTCGCTGTCCTCTCCGTCTACTCTTCCACCCGCACACCGGGTTGTGGCATCTTCCTCTTGGCCGGTCGAGCACTTCAATGTTAGCGTCTGTGGCACTAGTACTACCACCACCGAATAAGTCGGTTCGTTTTTTTACATTCACTTGCTTTTGGGTGAAGACTTTTGACTCTTTAGTCTCTTAACTTGTCAGCCCCACCCTCACATTTTTCAATCTGCTTTTCCGTTTTCTATTGTAGCTAGTTTTCGAGCTGTCAGTGTCAATGTAAGCGAGACAAAAGGGGGCTAAGGTTTGCATAAACGTTCGTTTGGAATAGATCAACGGGCCTGGGGGAAAGGTTGGCCAGTGTCGCTCAACCTTCTGCCAACTTGATTAATAAATCTATATATTTTACTACTAAAGGCGGCCCACTGGCCCAGAGGTTGACTAGCCCACCGGGAATTCTCCTGGGGCTCAGTCCGCTActgcttggtacctagctagcttcatctggctagcgAGTCACGACCGGATCGGGTTGTGAAGCTGGCCACAATAAGGATACGGCTCAAGTGGAATTTGCTGTttcccttcaaaataaaagtattgtAACGACCCAGCGTTTACTAGCGCGGATATCGACTCAGCAGTATGCTTTTGGGGCACAATCGATTGCGCGCTAGACTTCGAGCTAGAGGGTCGAGAGTTCGaggcctgctccctgcctgtttcattacagtaagtaattgacagtgatgcaaatatTAGAATTATGCGACACTTATTTTGAACGTTAACCGCACAGTCCACTATTGTGTCTAAGCCTTATTGTGGCTAGTTTCACATAGATGGGTCAGACACCCATTAATCAAATAACTGTCttgtaaattagggttattttagatgacacttGGCTAACTaaagctactgaaacagatgtagTTTTGCTGTGTATTTGGGGAAGAATTTTTTTCTCAACACATCCATCAGTTTTCTAGCTTTTTCTTTGACGACAAGCACTGTCCAGAGCTTGGGGAAGGgcaggtgcgcgagacaactttacaaGCATCATAGCGTATCGTTGTGaaatgaaatacgagtgataatTTACACTAATTAAcgtgttaaattattatgtgacgtgcagtcatagtCAAGGTCCTGATGATTGGTTCTTTGGTCAACAAGTGTTATTTGACACGCAAACGGAGTTCCATAGAAGTCCTGTTTGAGGATCAAACGACTCTACGAAACACCAAACCCTTTGGTGACTGAGACCAACCAACAACAGTGTGAAGGAGAGGAATGAAGGCCTGATCTTTGAGATGACTGTCTACCCAAAGAATTCGGTGCGGATCTTATCTGCCCGGGAGCGTGGGGCCCGTGGCCTTGGTTCCCAGCGCCTCCTGCAGCAGCTTGTTGAGGAGAAGACCCGGAGGATGAAATGGCAGAGTCAGAAAGTGGAGTTGCCGGACAGCCCTCGTTCTACCTTCCTGTTGGCTTTTAGCCCGGACAGGACCTTAATTGCCTCCACTCATGTCAACCACAACATTTATATCACCGAGATTAAGACAGGAAAGTGTGTTCACTCTCTGGTGGGCCATCGCCGCACTCCTTGGTGTCTGACCTTTCACCCTACCATCCCTGGTTTGGTGGCTTCGGGATGTCTGGATGGAGAGGTTCGCATCTGGGACCTGCATGGTGGCAGTGAGAGCTGGTTCACTGAGAGCAATGTGGCCATTGCCTCCCTGGCCTTTCACCCTACTGCCCAGCTCCTTCTCATAGCAACAAACAATGAGGTTCACTTCTGGGACTGGAGTAGGAGGGAGCCATTTGCCCTGGTCAAGACTGCCAGTGAGACTGAGAGAGTCAGACTGGTGAGGTTTGACCCACTGGGTCATTACCTGTTGACCGCTATAGTGAATCCCTCTAACCAACAGCAGAGTGATGATGACTCGGAGGTCCCCATGGATAGCGTGGAGATGCCACACTTTCGCCATCGATCCTTCCTACAGTCCCAACCGGTCCGCCGTACACCCATTCTCCACAACTTCCTGCACATCCTGTCATCGAGGAACTCTGGCTCACAGTCTGAGGAACAGCATCCTCCTGCACCCGCTGCCAATAGTGCTGCTGACTCCCCTAGTCTTCCCTCTGGACATTATTCTGCCCTGCGGAATCGCTCCCGACCCCCCTACCAGGGTTGTGTGCAACACCTTGGTATGGTTTGCTTCTGCAGTCGGTGCTCTGCCACCCGAGCCCCTTCACCATCTGGAGAGGACCCCTCTGACCCTGAGAGCCTGGAGGCCCAGTCTCAtgcctccaccttctcctctgcTCGCACTGAGCCCCGGCAGCCCTCTGAGCCTCGCTCCTCACACCGTCCCTCTGCCTTCAACAGTGTGTACGGCAGTGCTAGAGGACACTCTTTACGCACTCCATCTTCAGGCCCTGGCCAGCGCAGCATCCCAGGCCTTATAACCAACCAGGGCCACCAGCAGCCAGGCCTGGAGTGCTCTGGGCGACTGGCAGGAGCAGACTGGATGGGCAGCATGCTCAACATGCGGCCTGAGCATAGTGGGGGTGTTGGGGTATCTCCACCCAGGACTAGTGCATCCTCTGTCAACCTGCTGTCTGTGCTGAGGCAGCAGGAGGGCTCCTTTCAGTCGCCTGTCTACACCTCTACCACAGAGGGAGGAAGCTTGCCCCCAGCAGTAGTGAGCCCTCACACCAGTGGAAACAGCTCTGTAGATGGACCCAGCACTAGTAGTGGACACCACTCtcttggggagggagggagcaacaGCCCCACCTCGATCCGTAACGTGCTGCAGTGCAACTTGAATCGCTACTTCATGGAGTATGATCGCATGCAGGAAATGGAGCAGTCAGGTGGTACTGGTGGAGAGATCAGCCAAGAGCAACAGACACGGGAGATGCTCAATAATAACATAGAGTGTGAGCGGCCTGTCACCCCCCATTATCAGCCCCCCAACAGCAGTGATGGTGGTTCTGGTCCCTCCCGCGGCCATATGAACCGCTGCAGGGTCTGCCACAACCTGTTCACGTTTAACCAAGGTACACAGCGCTGGGAACGCACTGGCCAGACCCCATCACAAGAGGAGGGGAGCACCTCATGGCAGCCCCCAAGCCCCAACCCTGCCTTTCACACAATGAGGCCGACGGTGCTACATGTTCCCCAGTCCTCTGACAGGAGACAGTTATTACAGTCACAGCCCAGTGCTGATGAACCTGGAGGGGACACAGCCTTCACTCACCGGGGATCCTCTAGCTCACAGAGAGAACAGGCGGtggggttggtatataaccaggagacaggccagtggGAGAGAGTTTACCGACCGCCTGTCAGTCCAAGTCCAGCGGCGAATGTACCACAAGAGGCCTTAAACCAAGAAATGCCTGACGAAAATCACGATGATGATTACCTGAGAAGGAGGCTTTTGGAGTCATCTCTTATGTCGCAGTCTCGATATGACATATCTGGCTCCCGGGACCATCCTATTTATCCAGATCCTGCCAGGTTGTCCCCTGCGGCATATTATGCCCAGCGGATGATTCAGTACTTATCTCGGCGTGACAGCATTCGCCAACGATCACTGCGCTACCAGAGCCGACTGCGGCCTCTCTCATCCACCTCGGATAGCCCAGGAAGCAACCCCTCCCCCTCCGTTGAGAACAACGAGGTGGACTTTGAGGAGTTTGAggATAACGGGGATCGTGCCAGACACAGAGCTCCACGCAACGCTCGTATGTCTGCCCCCTCGCTTGGCAGATTTGTTCCCCGGAGGTTCCTACTGCCTGAGTACCTGCCATATGCTGGGATTTTCCACCACGAGAGGGGCCAGCCTGGCCTGGCTACCCATTCCTCCGTCAACAGGGTCCTAGCAGGTGCGGTTATCGGTGACGGTCAGTCAGCTGTGGCCAGTAACATCGCCAACACCACCTACCGCCTCCAGTGGTGGGACTTCACCAAGTTTGACCTACCTGAAATCAGCAACTCCTCTGTCAATGTGCTGGTGCAGAACTGCAAGATCTACAATGACGCCAGCTGTGACATCTCTGCAGACGGGCAGCTCCTGGCCGTGTTCATACCCAGCAGCCAGCGGGGCTTCCCAGATGAGGGCATCCTGGCTATCTACTCTCTGGCGCCTCACAACCTGGGAGAGATGCTCTACTCCAAGAGATTCGGTCCTAatgccatctctgtcagcctgtcccCGATGGGCCACTACGTGATGGTGGGCTTGGCCTCCCGCAGGATCCTGCTCCATCACACTACAGACCACATGGTAGCGCAAGTGTTACGCCTGCAGCAGCCCCATGGTGGAGAGACTTCCATGAGGAGAATGTTTGATGTGGTGTACCCCATGGCTTCTGATCAGCGGAGACACGTCAGCATCAACTCGGCCCGCTGGCTCCCAGAACCTGGCTTGGGGCTTGCATACGGTACCAACAAGGGAGACCTAGTCATCTGCAGACCTGTAGATGCCCAGTCAGACGGAGACGGCCCCGCTGAGCACAGTGAGCCCATATTTGCTGTCAACAACAATCGAGGCAGTGGTACCGGTGGGAGCCGCGATGGAGAGCGACCAGGGAGCAGCAGGGCCCCCTTGAGGTCTGAAAGGGACATGAGACTTATGAACGCCATCGGTCTCCAGCCCCGTCATCCTACCCCCGTTGTGACCTCACAAGGCACACAGACACCCGTCCTACGTCTTCAGAATGCCGAAACACAGACTGATCAAGAGCCACAGGTTCCCAGTACCTCCCGGGCCTCCCAAGCAACAAACATCGGTGGACACATAAGGGACCTTCATCCAGGCAGCAGCACAGATATGGTGCCTGAGACGCCCCCGCACACACTGCAGGATGATGGCGAGTCAGCCGAGGCCTTCACAGAGGCCAGCACCACCTTGGCTAACCCAGggGAATCTCAAGAGCAGGGCAGTGGGGAGGATGCCGTTTCTCGGCTTCGAAGGCTGATCGCCGAGGGTGGTATGACGGCCGTGGTCCAGAGGGAGCAGAGCACCACCATGGCCTCCATGGGTAGCTTCGGTAACAACATCATTGTTAGCCACCGCATCCACCGCGGCTCCCAGACTGGGACAGAGGCTCAGGATGGGGGCAGAGACACTCAGGGCAGGGGTCAGGGTCTTGATGGAGGTGGTTGGACATCCTTCTCTCCGTCCCACCGCGGCACTCTGTCGTTCACAGAGCCCACCTCTCGTATTCTGACCCACCACAGCATGCAGCTGGGCGAGAGCTCAGGCTTCCTGTTAGAGCCCTCTGGGGCCCATAGCCGAACAGTAGCACCTCTCCCCTCCCAGTACATCACAGTCTCTTCTCATCTCAGCCCTCAGGGGCCCattggggtggaggagggggccGATGGGACCCCTATGGACACAGACGATGCGTTTGAGGGTGTGGGACTTGTCGATGATCTAGATCTACACTTGCCCTctgcttcctcctcctcttcttcaacCCTGTCCCCTGTTGTCTCCCCTCTTGACAACAACTTCAGCGCCAGTTACCATGGAGACCCCTACAGTCGATAGATGGTCATGTGCTTTCCATACCCATCTGATCTCTACCTAGAAGACTCTCCTCCGTCTAGCCTTATTACATTGACTACTGGTTTTTCTGGAGGCTTTCGAATCCCGACATTGAAATTAGGCACTTAAAACTTCATCCCACTCCTCCATTGCCTGTtcagttttctatccaatagtaggCTGGATGAGACCTACCTTCAACCTAGGATTAGGCTCGGTCTCTTTCTTGGATGTGGTGTTCCTTTGCGTTCCCTGACCACTTTCAGACTTGTTTGTCATTGCCTAATTGAGAGCAAGAATCCAAAGCTACAGTTTGGCCATTCCATTGGAGAGAGGTGGACCTGAATGAATCTTTTACAATCAGGGTTCAGATCGGTGGTTGTCGAATGCCACCTGGGACCAAATTCCATGATCAAATTGCAACGTTCTTGAAAACGTGTTAGGACTCTGCCCCTTGCTCACTATTAGCAAGATGCTGGTATAGTAGAAGCACATTTTATTAACCAATCACATTGGTACAATTTGATTGTGAAACTGGATGATTCTGTCTATAAGttacatttattttgtgtgtgagagaggatgTTCTATGTCACCCGTGGTAGTTACAAAACGTTTCATTCTAGTCGTCATGGTGGATTAGTGGTTTGCAAAGATGTAGTTGACCCAAGATAACTATGAATATCTTGTACTACATAGGAGAGCAGCATTACATTACAGAGTAGAATTTAGGGAGACCACATCCACAACATGCTATTCCAAATATGAGCGATGTTCATTATTATCGCCGTGCTCTGTTCATGACAAAATAATTCCAGACGTATTATTTTTTTGCTTATTTATGATATCATAATCACCTTCTCATTTAGACTTCTTTTGAAGACTTTGATACTGCCTGACTGATAAACTGCCCGGTTTTGATTTGGAAAGTTCAAATAGCGCACAATGCCGTCAGGAGAACAcctaattgtttttttgtttttttttaattacccctttttctccccaatttcgtggtatccaattgtttttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatacgtcctccaatacacaacccaaccaagctgcactgcttcttagcacagcgcgcatccaacccggaatccATCCCCACCAatttgtcggaggaaacaccgtgcacctggcaaccttggttagggCACACCGCGCCCGGCCAGCCACAGAatttgctggtgcgcgatgagacaaggacatccctaccggccaagccctccctaacacggacgacgctaggccaattgtacgtcgccccacggacctcccggtcgcggacggttacgacagagcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594574 lncRNA upstream 95294 56990543 ~ 56993453 (+) True G524577
TU594550 lncRNA upstream 116558 56960763 ~ 56972189 (+) True G524555
TU594465 lncRNA upstream 182353 56906153 ~ 56906394 (+) True G524472
TU594463 lncRNA upstream 188493 56899979 ~ 56900254 (+) True G524470
TU594466 lncRNA upstream 189327 56899176 ~ 56899420 (+) True G524473
TU595657 lncRNA downstream 3843 57199932 ~ 57200947 (+) True G525581
TU595659 lncRNA downstream 5567 57201656 ~ 57201826 (+) True G525583
TU595739 lncRNA downstream 37005 57233094 ~ 57233306 (+) True G525663
TU595743 lncRNA downstream 40759 57236848 ~ 57237071 (+) True G525667
TU595747 lncRNA downstream 44576 57240665 ~ 57240883 (+) True G525671
XM_021606942.2 mRNA upstream 128592 56954134 ~ 56960155 (+) True ndufs3
XM_021606939.2 mRNA upstream 137336 56946354 ~ 56951411 (+) False ptpmt1
XM_021606938.2 mRNA upstream 137336 56947556 ~ 56951411 (+) True ptpmt1
XM_021606897.2 mRNA upstream 525792 56553850 ~ 56562955 (+) False LOC110526184
XM_036980495.1 mRNA upstream 525792 56553862 ~ 56562955 (+) True LOC110526184
XM_021606949.2 mRNA downstream 65979 57262068 ~ 57277274 (+) True LOC110526197
XM_021606954.2 mRNA downstream 311843 57507932 ~ 57550725 (+) False LOC110526201
XM_021606957.2 mRNA downstream 311843 57507932 ~ 57550725 (+) False LOC110526201
XM_021606959.2 mRNA downstream 311843 57507932 ~ 57550725 (+) False LOC110526201
XM_021606955.2 mRNA downstream 311934 57508023 ~ 57550725 (+) False LOC110526201
TU593913 other upstream 968013 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1172801 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1522248 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1604140 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2147874 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 379995 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 408019 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 425759 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 443385 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 507369 57703458 ~ 57710340 (+) True G525912

Expression Profile