RNA id: XM_021606954.2


Basic Information

Item Value
RNA id XM_021606954.2
length 6125
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110526201
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57507932 ~ 57550725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGATAGGGGGGTGAATGAGATTGACGAAGAGTTCTTGTTCTGTATCTCAGTTTTTCTCTTTATACTCAAATTAAATAGTGGGAAAAATTATCGGGAAAATCACATCATATGCAATGGAGTGTATTTGGATATTAAGTGGATAAATACACGCTCTGGGCGTTTTTCGGTGAAGAAGTACTACGGTGTTtgtaaatatttatttaaataatttgTGTGAGAAGAGCAGGGTTGGCTGCTGCTCAAGTGAGTAAAAGAGGAGGCTGCCACCCCCTCAATGCAAAATTGGATGGTGTTCAAAACTGAAGACTGTGTGAAGGCTGAAAGCTGTCCAGGACTGAGCTTCCGACAGAAGGGATCAATGATGGAATTACAGACCCTCCAAGAGTCCCTGAAAGCGGATATACAAGTTCATCAGAAACTAGTGTCCCAGATGAAACAGGATCCACAGaatgctgattTGAAGAAGCAGCTCCATGAACGTCAAGCCAAGATCACAGCGCTGAGTGAGCAGCAGAAGAAGGTGGTGGAGCAGCTGAGGAAAGAGCTGCTGGTTAAACAGGATCATCCGGAGGTCCAGGCCCATCAGCAGCCCCAGCACCCAGTGCAGCCTGATGGGAAGGCCTCTGCCCTGCCTAACCTCCACACCCCACCCTCCCTGCCCTCGCCTGACAAACTGAGCACGCCACAGAACACGATGACGATCACCCCGGTCATCGCCACTAAGACTCTACCTCTGGTACTGAAAGCTGCCACCGCTACCATGCCTGCTTCTGCCGTGACGCCGCGACCCTCCGTCGCCAAGGTCACAGCCATCAGCAACACGCCCAAGGCCAGCATAGGTCACCCTGACTCACTGAGTTCTCCTATCAACCTTCAGACATCCAGCAAGTTGACCAATCAGGGAATGGAGCCAGTTCGGATAGTCTCCAAGAACACTGTTGTTGTGCAGGCCACCGCCCAGCCTATCAAAGTTCCTCAGTTTATCCCTCCACCTAGACTGATGCCTCGACCTACCTTTGTACCGCAGGTCCGACCAAACCCAGCCACGCCTACACCCACTCCCACGGTGCCCATCGCCCCTGCGCCCCCTCCTCCCATGCTGGCTGCCCCTCAGCTCCTCCAGCGGCCTGTCATGTTGACCACCAAGCTGACCTCCACCTCACTGGCCTCCACCACCGGGCCCATCCACCAGGTAcgcattgtaaacggccagcccTGCGCCAGCATTACCAAGACCCTGCCCTCTGCCCAGCTGACTGGCATCGTCATCACCTCGCCAGCCACCATTACGGCCACCACCCCCCTGGCAACACATCAGACCCTTCAGATCAGAAGCCTCAGCCCTGACACCAAGACTGTTAAAGCTCGGGGTGTTACCGAGCCGAAGACATCGGCCAGTGCGCCCTCCTCCCCCTCACACGCCACTAGAGGCACCCCTCCACCCCTGCTGAGGAACAAAAGAGAGGACAACCCCCAGAAACTAGCCTTCATGGTGTCCTTGGGACTTGTGACATATGACCATCTGGAAGAGATCCAGAGTCGGAGGCAGGAGCGCAAGCGGAGAACGACAGCAAACCCGGTATACAGTGGAGCAGTGTTTGAGCCGGAGCGTAAGAAGAACGGCGTCACATACCTGAACACTCCTCTACACCAAGGCACCCGGAAGAGAGGTCGCCCACCCAAATACAGCAGTGTTCCTGAGCTGGGTCTTCACTCCCCAACATCCCCCACCAGCAGTCATTCCGCCTCCCCGGCCCACCACCGGCCAGAGAGGGGGGGCTCTCACTTCCCCGTCCACCCCCACACCCTCCCTCTGCCTAGCCCCAACTCCGGGGATGGAGACATCCATGAGGACTTCTGCACTGTGTGCAGGCGCAGTGGTCAGTTGCTCATGTGTGACACATGTGCACGTGTTTACCATCTGGACTGCCTCGCTCCACCTTTGAAAACCATTCCCAGGGGCATGTGGATCTGCCCCAAATGTCACGACCAGATTCTGATGAAAGATGAGGCAATCCCATGGCCTGGAACCCTCGCTATCGTTCATTCCTACATTGCATATAAAGCAGCtaaagaggaggagaagcagaAACTGGTGAAGTGGAGCTTGGAACTGAAGCAGGACAGAGAACAACTAGAACAAAGGGTCAAACAGCTGAGCCAATCCATAACAAAATGCATGGAGAACAAGAACACTATCCTGGCCCGTCAGAGGGACATGCACAACTCCCTGGAGAAGGTCAAAGGCCTGGTGCGTCTCATTCAGGGCATCAACTTCTGCCCATCCCCCGAGGTCTCGCCGCCAGCGGTCCAGACCAGCATGACAAATGGAGGAACAGACGGTGCCAGTGTTGACCACACGGGCGACACAAGTCCTGAGGATCACAAGAACATGACTGACAATAGCGGCGACGACCTGAACAACAACACAGACGGGGcgacagaggaggaagagaagaaagaggaCGTTAAAGAGATGGACAACCTCAACAGCAGCAGCCTTGGCAAAACCTTAGAGCCTCCCCAGACTATAGCACCGGCCCTTGTGGATGTAGCAGAGGGGGCCAAataacacccacccacccaccaagtccagggacaggaacaggaacccccaaagagagggaaagaaaaagatAAAGCACCCCATGAAGTTGCCAATCGATTAACACACACcgacatatatattttttggtcgTTGTTATTGCAGTTGTGTATTATCGGATTGTCTGTGAGGACATACGTTATGAGTATCGGAACGAGAAATGGAAAGGGACGAAGGAGGGTGACTTATGGTACCAGTGGTATGCCAATCGAGGTCACAGATTATTATTCAAGTCTGATGATATTGACGCTCTTACTAATAATAAGGATATTGTTAATAGTAATAAACATCACACCAATGTGTGCCTCCAATAGTCGCCATGGCGTCTCTTTGTGGGGATGGTTTCTTAGGGTGTCTTAGTCTGCAGCTTCAGGGGAGATGGATCCGAGAAGTCCAAAGACAAGACCTGCCCGCTCGCCTGAAGATCCACCACCTACACCACACCAGAAACAATTGGATCAACCAAAACACCATAACAGCCATTTGGAATTTGAAAAACTACCAGGGGACTTAGGTTTTTGTTTGCTGCAGTATTTGTCAACAGTTTTGAAAATCACTACAAAGTATTGCCTGAGGGATATGATTGGTCCCAAATCACACTTTTTGTCTTACAGGAGCTCCAGCTcacctccatccatctatcccacCTGCCCCCATTACAACCACCGAAAACTCTGACAATACAGCTTAAAGTAACATCACAGGACAGTTGATGGATCAGCATAGGGTTAGCCTCTCGTTCAAGTTGCATCCACTGTCACCTCAGTGCtgcccgacagacagacagacagaccggctACAGTGGGAGGAGCCCAGCATTCGGCTTAATGAAGATCTGTGGTCTTCGGCTGCATCACATGGACTCATTGCATGCTTCATTGACATTGGAGGTGTTTTTTCTTTTCAAGGTCATTTTATCATGACTTGTGTTGCATTGTCCATTGTCCATTGTTGCTGAACCTAGCATTCCTTTTTGCTTGTTGAGAATATGATTGACCAATTTGTTGAGTGATACATTCAGAGACATAGCACGAAAGCGGCTGCATCAATATTCCATTTGAATGATAGAGGCCATGTGAATGCACCTCTAGGCATGCATGGGGATTTAGCAACTATCAGTTCAGATATTGTCTGAGAGGTTTTTTATTTGTGTCCGTTTGTTATGCCCCTGGGATCTGTTGCTGAAGGAAACTAACAATTTATTCTGGGGGAATCTGTTTATATTCAGGTCTTCCTAGTTTTCAAACATGGAGATATGCTTCTTCAAAAGTGCTTTTCTGTTTCGCATTACCTTGGTTTCGTATCAAATATATTAGAACTGGAAAATACTATGTAAATAGCTTTCTTTCTTTTTTGATGTTCCTTGCAATTGAATTACCATTCAATATGCTGAATTCATAACTGCCAAATGCTATTGTATCCAAATACAGCAGGGAAACAGTCCTATTTTCTTACATAATGTTTTTTAAGGTTTCAATTAGGAGTCCCCATACATAGGCACACATTTTGCATGGCCGTTCCATGCATACAAAAGAGAGTGTGGCCATGACATTGTTCCGAATGTTGTTTGGAAAAACTGTCAGGAACCTTGTAGGAAAAGCACAAACTTTTTGGCAAAAGAAACTGGAACCGAACCACATACCCTCATCCTGCCATAAACACGTCTAAAGTAAATATGAACATTTTCATTATCTATATTTTACACCACAACACTGACAAGTCACTTTTCATTTGACACTTTTGTACAGTACGTGTAGCTTTTGTTTATAATCTGCCATTTTACATGTTTAAGTCCTTAGAGTTGCAATGACGTGTCGATATATTCGTTTTGAAACACTTGAGAAAGTAGGGACATTAAATGGAAATGGAGGAATAGGCTGCCAGTAAACATATCCCTTCATCACAGCCTACTTGCTGTACTACACCATACGGTATGGGTTCCCCTGGGGTGCCTTTTTCTAGAGAGTTTGAaggttttttatattttctcttGACATGAAATGACCAACCATGTTTTAGACGGGTTAAGTTTGAAAAAAAATGGtttcaaaataataaataaatctgCATAATAATGCAATTAACTGGAAAGCACAAGAGAAGATGCGAAGCGGTTTGAATCTATAGCCAGATCAAAAGGAAAGCGTTAGTTAAAAGAATAAGTGATGGCCCAGTCCAATGTCTTGTGTTGAGGCCACTCTTCCTTTTGGCCTACAGTACTTGTCATCTTATAGCAATTGCCTTAAGAAATTCTTTCTCCTTGTGAAGAAAATGTGTTCGGTGTATTGTTGGTCTTGTTTGAGTGTCTCTGAATTATGGAAATATTGTCTATTTGTGATGAACCACTTCAGGAAATCTACTTCTCTTTGCACCAAACTGAAAAGATAGGTTCAAATTGGAATCTATTGTTTTCACAAGGGGTCAGTTGCTCTTAGTCATCATGTAAGAGGGTTCTGATTTAGTTTTGACTTGACTTGCCAGTGTATGAAAAATAAGGATTTGTGATTTGAACTACTATTTGAGTTTTCCCTCTACCAAGTCCCTCAAATACAAGCAATTAGCAAATATTATAATGCACCTTTGGTTGAACACTCAACAGTGTTACATCCTTTAGCTCTCTCCTGGCTGTACATTTGCCATCTTCACAGGGCAAGATGCAAATGATAAAAGTGACAGCAATGATGACACACACCATTAATGTGTGTAATTAGGGCCTGATTTCCAAGCTTTTGAATTTTTCCTGAATATTGTTAAATCATTTAAATTGGATTCTTCATCGTTCCTTTATAATCCTTTTTGGTGTACTTTGGTGCAGAAGCTTAGACCATGTGGCTCTCAGTGCCTCAATAACGCAATAGAAACAATAAGGATCTCAGCAAATACACTCCCCTCTCTGTGCTCAGCATGGCGAGCCCAACATCAAAACTACAGCTGTCAAAACCTCAACAAATCTATGCCTACATATGCAAATAGATTGTATGGACATGATTATACTTATAAAAACCATTCTTACTTTTCATATATTTAGAACTGGATTTCGCCCTTTCCAACCgtggtaacactttactttaaGGTGCCTTTCATAAAATATGTATAAGTAGTTTATAGACTGTTATTTAGTAGTTTACAGATTTGAGTTCATAACCCATTATAACTAATAAGTAACACTTTATAGACCAGTGAGGAAGGGCATAGGGTACCTTAATGTAAAGTTTTACAGCAGCCTATTGAAAACTACAGCTGTACAATTAAATGTTTCATGTACTGTATACGTACCCCAATTACTCGTGTAGGAAATGAAATATTCCTATCAATTAGTGACTTTTATTGGATCATAACTTTGAAGGCAAAGTGCTGAATATTATGGGCGTAATTGTTTTTCTTTTCTGATTTAGGAAGGAAAATCGGGGAGGATGTGGTATGGCCAACTCAAATATTGTGTAGTGCTTTGTGCTGTGAAAGAAAGTAAATGTCAtgttgtggtaaaaaaaaaaaaaaaaaaatggaaacaaCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595887 lncRNA upstream 75380 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 214516 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 229897 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 267049 57240665 ~ 57240883 (+) True G525671
TU595743 lncRNA upstream 270861 57236848 ~ 57237071 (+) True G525667
TU595730 lncRNA downstream 31087 57581812 ~ 57584090 (+) True G525654
TU595732 lncRNA downstream 34793 57585518 ~ 57587316 (+) True G525656
TU595723 lncRNA downstream 41929 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 43676 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 131263 57681988 ~ 57682196 (+) True G525897
XM_021606949.2 mRNA upstream 230658 57262068 ~ 57277274 (+) True LOC110526197
XM_036980546.1 mRNA upstream 311843 57088747 ~ 57196089 (+) False LOC110526195
XM_021606948.2 mRNA upstream 311843 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA upstream 311843 57094893 ~ 57196089 (+) True LOC110526195
XM_036980547.1 mRNA upstream 326825 57094812 ~ 57181107 (+) False LOC110526195
XM_021606978.2 mRNA downstream 7800 57558525 ~ 57568473 (+) False atg13
XM_021606979.2 mRNA downstream 7800 57558525 ~ 57568473 (+) False atg13
XM_021606980.2 mRNA downstream 7800 57558525 ~ 57568473 (+) False atg13
XM_021606981.2 mRNA downstream 7800 57558525 ~ 57568473 (+) False atg13
XM_021606982.2 mRNA downstream 7800 57558525 ~ 57568473 (+) False atg13
TU593913 other upstream 1387198 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1591986 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1941433 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2023325 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2567059 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 25359 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 53383 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 71123 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 88749 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 152733 57703458 ~ 57710340 (+) True G525912

Expression Profile