RNA id: XM_021606978.2


Basic Information

Item Value
RNA id XM_021606978.2
length 2845
RNA type mRNA
GC content 0.46
exon number 18
gene id atg13
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57558525 ~ 57568473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACGCCATACCCCCAATGAAAATAAACAACAAATGGGCCAGCTGGTCAAGGCTTGTGTCCCAATAACATAATGCGACGGTGTGAACTTAGCCAATATAAGAATATGTCAAATTTAGGCATATAGGTAACCAGAACTACACTGTTTAGTACGCTATCAGCGCAACATTCAAGTACAAGTTGTGATTTTCGGATGTGATGAGCTAACGTCAAGGGCATTCCATGATGGACAGTGATCTAAGTCCTCAGGATAAAAAAGACTTGGACAAGTTCATAAAGTTTTTCGCTTTGAAGACAGTGCAGGTGATAGTCCAAGCGCGACTTGGGGAAAAAGTATGCACACGCTCCTTGTCTTCACCTACTGGCTCTGATTGGTTCAATCTGGCAATCAAAGATATCCCAGAAGTTACACACGAGGCAAAGAAAGCTCTGTCCGGGCAGCTTCCTGGCATCGGACGATCCATGTGTGTTGAGATCTCCCTCAAAACCTCAGAGGGAGACTCAATGGAATTGGAGACATGGTGTCTTGAAATGAACGAGAAgTGTGACAAAGATATTAAGGTGTCCTACACTGTCTACAACCGCCTGTCATTACTGCTCAAGTCACTGCTGGCCATTACAAGGGTAACCCCAGCCTACAAACTCTCACGAAAGCAAGGCCATGACTATGTCATACTGTACAGGATATATTTTGGAGAGGTTCAACTCACAGGATTGGGAGAAGGGTTCCAGACAGTGCGTGTAGGAGTTGTGGGAACTCCCATTGGAACAATCACCTTGTCTTGTGCTTACAGGACAAACCTGGCCTTCATGTCCACCAGGCAGTTTGAGAGGACGGCTCCGATTATGGGCATAATTATTGACCACTTCGTTGAGCGCCCCTTTGGCAACATGGGACACATGCGTCCATGTAACTACAGAGCACCCGGGGAAGATGAAGGAGCATACAATGGGGTGGAAGATTCTCAGGAAGTGTGCACCACGTCCTTCTCCACTTCTCCACCCTCACAAtgtgtgttcaCTGTAAGTAAGGCACATTTAAAGACCCCTAAACCTGCAGTGATGGACACTCTGAAAGTCCCCATGATGGGCCTGGCCTTCTCACACCAActctactGCTCTCGTCTTTCTTATCAGCCTCCTGTTCTTGTCGGAGCTGCTGACTTCTGCCACCCTTCCACCTTAAACGCTGCCAACCCACACCAGGTAACCACCCAGATGGGAATCCCAGGGAAGGAGGGGGGCGTACCCCAGCAGGTGCCTGTGCAGCCTTGTCATGGTGCCCAGGCAGAGCATGGACGAGTGTCCTCATGCCCCCCCGCTGATCATGTTCCCGCCACTCCCTCCAGCAGTGGCGAGGGTGCAGAGACCTTGTCGAGGAGCATTGAGGTGAAGGGTGTCTCTCCCTGTGATGTACTGGAGACCACCTTCACCAGGAAAGTGGGTGCCTTTGTCAACAAGCCAGGCACACAGGTAACCACAGCAAGCCTGGACTTACCATTTGCAGCGTTTGCTCCCAGAGCCTATGACCTCGAGGAAAATGACCCTATGGTTCAGCCGCCGGAGTCCCCAGCCACGTCCTCTCCTCTGCAGGGCAGTTTACACTCCCAGGGCTCTGGTGAGAGTGGTGGCCCGGCACAGGACGACTTTGTTATGGTGGACTTTAAGCCTGCGTTCTCTAAGGATGACCTGCTTCCCATGGACCTTGGCACATTCTACAGAGAGTTCCAGAACCCCCCACAGCTCGCCAGCCTCACAATTGATGTCAGTTCTCAGTCCATGGCAGAAGACCTGGACTCTCTTCCCGAAAAACTTGCAGTATACGAGAAGAACATTGATGAATTTGATGCATTTGTGGACACATTGCAGTAGGGATAGAAATAGATCCACTGGCTGCAACGACAAATTATCCCATTTAAGTCCATCTGCAAGGTCCTGTTGTCTTTCGAGCTTGTTTGCATTCAGTCTGTGTATGCCTCTTCTTTCTTCTCTAGATTTGAAATTCCACATTGATTTGTAATCGGAATGTTCTTCAAACCTCACTGTTTGATGTATTGTAGAGTAAGAGAGCCTGTACCCAACAGAAGACATCTTTTTTTCTGATGTGAAAAACTGCAACATTTGCTCTAGTGTTGAGCAGACTGTCATAGTGTAAATACCAAATCCCCTCTCACCTTGCTGTTATAGAACTTAACACACAATAACAAAGACATTCAGTTCATGAAAGCGATTTTGTCTAAATAATGTCAGGAGGCATTGTATTATTGCTGTCCCGTGTGACACGGAGAACGTTCATAGCGCCTATGGAGTCAGACATGGCTATGTTTTAGTAGATGTGAAGAAGCCAAGCTATGTATGGAAAATGATCAGTAGTAGTCAATCTATACCCAAGAAACATACTCTAGCTGAATCTGTATATTGAAAATGTAAATTGGGAGAAATGTTGTCCTACCAACTTTAGGACAAGTATCACTACAAATTATGTACCATATAAAGCAAGTTTACTTTTTCCCCCTTATCTGTAAAAAGGCTAAACATTATTTGCACTTTCAATGTATCAATCTTAAGTCCTCTTGATTTTCCCAATGCTTTGTTAATATACAGTAGCATGGCCATGCGTAATAAAAGTTATTTCAAATGGCCTATTTTGTATTATCGGAAAGGAATAAGCCAGAGGccctatatatatatttctgatTGTGGTCGTTTGTGATTTATACCAGAACACCACGAGTGATTGTATTTGTCGCCCCTCTTGAAGCTTAAATACAATAGAGCATCAAAACTCTTGTCAAATGAGTACGCCCCTCTACACAACTGAATAAATCAAACGAAGGCACTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595887 lncRNA upstream 125973 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 265109 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 280490 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 317642 57240665 ~ 57240883 (+) True G525671
TU595743 lncRNA upstream 321454 57236848 ~ 57237071 (+) True G525667
TU595730 lncRNA downstream 13339 57581812 ~ 57584090 (+) True G525654
TU595732 lncRNA downstream 17045 57585518 ~ 57587316 (+) True G525656
TU595723 lncRNA downstream 24181 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 25928 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 113515 57681988 ~ 57682196 (+) True G525897
XM_021606954.2 mRNA upstream 7800 57507932 ~ 57550725 (+) False LOC110526201
XM_021606957.2 mRNA upstream 7800 57507932 ~ 57550725 (+) False LOC110526201
XM_021606959.2 mRNA upstream 7800 57507932 ~ 57550725 (+) False LOC110526201
XM_021606955.2 mRNA upstream 7800 57508023 ~ 57550725 (+) False LOC110526201
XM_021606956.2 mRNA upstream 7800 57508098 ~ 57550725 (+) False LOC110526201
XM_036981766.1 mRNA downstream 19120 57587593 ~ 57591339 (+) True LOC110526205
XM_021606991.2 mRNA downstream 53322 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 53324 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 70964 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 76194 57644667 ~ 57647053 (+) True aplnr2
TU593913 other upstream 1437791 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1642579 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1992026 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2073918 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2617652 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 7611 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 35635 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 53375 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 71001 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 134985 57703458 ~ 57710340 (+) True G525912

Expression Profile